Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03800 ATGGCTATAAAAAGGGAGAAAAAGTCCTCAAATTACATCACTTTTCAACAACCCATAACAACTGAAAAAAAAAGAGACCAAAGAGAACTTTCAGTGACATCAATGGCGGAACAACAACTCAACGGCAACGGTAACGTAACCGTGACGGAGTTTCCCTGCAACGCCGACGGCGTTTGCATGGCGTGCCAACAGACGCCTGATGAAACCGATTCACTTTTCTGCAAAACTTGTGGATCACGATGGCACGTTCCGTGTCTCCCCGTTCCTCCGACGAGTGCTGTTGACTGGGAGTGTAGTGACTGTGCTGTACCGGTTGAGAATGCGGTTGTGTCTGCTCCGGCTCCGTCTGTTGCCGGCGATCTTGTTTCTGCGATTCGTGCTATTGAAAATGATGATTCGCTTACTGATGAGGAGAAGGCGAAGAAGAGGCAGGAGCTTGTTGGTGGATCGGTGCAACCGGTTGAGGAGAAGAACGGGAGTAAGAGGAATGGTGTGATGGATATCTTTCATAGTGGTTTGAATTGCTCTACCTGTATGTTTTTGCTTGAGAGACCTGTTACTACTCCATGTGGGCACAATTTCTGTTTAAAGTGTTTTCAAAAATGGATTGGTCAAGGAAAGCGTACTTGCTCGAATTGTAGGGCTCCAATTCCAGCCAAGATGGCGAGTAATCCTAGGATCAATGCTCAGTTGGCTATGGCAATTCGTATGGCCAAGCTGGCCAAATCGGAATCTGTTGGAGGAAGTTCTACTCCAAAAGTTTATCAAGTTGTTCATAATGATGAGCGCCCTGATCAAGCTTACACAACTGAGAGAGCCAAGAAAACAGGCAAGGCTAATGCCTGCAGTGGTAAAATCTTTGTGACAATTCCAAAAGACCATTTTGGACCTATCCTTGCTGAAAATGATCCAAACAGGAACCGTGGTGTTCTTGTTGGTGATACTTGGGAGGATAGGATGGAATGCAGGCAGTGGGGAGCTCATTTTCCTCATGTTGCTGGGATTGCTGGTCAGAGTAATCACGGTGCTCAATCTGTTGCCCTTTCTGGTGGATATGTTGATGATGAAGACCATGGTGAGTGGTTCCTTTATACTGGAAGTGGTGGAAGGGATCTCAGTGGTAACAAACGTACCAACAAAAACCAGTCCTTTGATCAGCAGTTTGAGAACATGAATGAGGCTTTGAGAGTCAGCTGCAAAAAAGGCTATCCAGTTCGTGTTGTAAGGTCCCACAAGGAGAAACGTTCTAACTATGCACCTGAAGAAGGTGTGAGATATGACGGGGTTTATAGAATTGAGAAATGCTGGCGCAAAGTTGGACAGCAAGGTCACAAGGTTTGCAGGTACTTGTTTGTTAGGTGTGACAATGAGCCAGCTCCATGGACAAGTGACTTAACTGGTGACCGTCCCCGTAAACTACCTACTGTCAAGGAGTTTAAGGGTGCTGTTGATGTAACTGAAAGAAAGGGTGATCCTTCATGGGACTTTGATGAGGAAAAGGGTTGCTGGTTGTGGAAGAAGCCTCCACCTCTAAGTAAGAAGCCTATGAACATTGTGGATCCTTTTGATGCAACCAAGATAAAAGTTGTCAAGCCAAAAGCACCAAAGGTGTCCTTTAAAATCAAGGACAGGCTATTGAAAGAGTTTGGTTGCAATATCTGTCGCAAGGTGTTATCTTCTCCTCTCACTACACCTTGTGCTCACAACTTCTGTAAAGATTGTCTGGAGGGTGCTTTTTCTGGCCAGAGTTATATCAGGAATAGGAACACCAAAAGTGGACGTGCTTTGCGTACACAGAAGAACATTATGAAATGCCCTACTTGTTCAACTGATATAGCTGATTATCTCCAGAATCCACAGGTTAACAGGGAGATGATGGGTGTCATAGAATCGCTGCAGCGTCAGGCTGAAGAGATGGCAGAGAGTGCTGAAGAGTCAAGTTCTAAAAGTGATGAAAATCTGAAGCCAGAGGAGGAGAGTGATGTTTCAAAACCCTCTGATTCAGGTGAAGAAGTCTTGGAAGTGATTAAGGAGAATGATGATGAGGAGGAGCCTCCACAGAAGAAGAGAAAAGGTGCTGGTGGCAAGGCTGTGGCGAATGTGGAGGAGGAACCCCCTATTGATGTGGCAGAAGTGGCTTCCAATGCAGTGGCTTGCAACTTGTGA 2166 0.4571 MAIKREKKSSNYITFQQPITTEKKRDQRELSVTSMAEQQLNGNGNVTVTEFPCNADGVCMACQQTPDETDSLFCKTCGSRWHVPCLPVPPTSAVDWECSDCAVPVENAVVSAPAPSVAGDLVSAIRAIENDDSLTDEEKAKKRQELVGGSVQPVEEKNGSKRNGVMDIFHSGLNCSTCMFLLERPVTTPCGHNFCLKCFQKWIGQGKRTCSNCRAPIPAKMASNPRINAQLAMAIRMAKLAKSESVGGSSTPKVYQVVHNDERPDQAYTTERAKKTGKANACSGKIFVTIPKDHFGPILAENDPNRNRGVLVGDTWEDRMECRQWGAHFPHVAGIAGQSNHGAQSVALSGGYVDDEDHGEWFLYTGSGGRDLSGNKRTNKNQSFDQQFENMNEALRVSCKKGYPVRVVRSHKEKRSNYAPEEGVRYDGVYRIEKCWRKVGQQGHKVCRYLFVRCDNEPAPWTSDLTGDRPRKLPTVKEFKGAVDVTERKGDPSWDFDEEKGCWLWKKPPPLSKKPMNIVDPFDATKIKVVKPKAPKVSFKIKDRLLKEFGCNICRKVLSSPLTTPCAHNFCKDCLEGAFSGQSYIRNRNTKSGRALRTQKNIMKCPTCSTDIADYLQNPQVNREMMGVIESLQRQAEEMAESAEESSSKSDENLKPEEESDVSKPSDSGEEVLEVIKENDDEEEPPQKKRKGAGGKAVANVEEEPPIDVAEVASNAVACNL 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03800 721 ProSiteProfiles YDG domain profile. 305 453 IPR003105 -
Vifa1g03800 721 Pfam Zinc finger, C3HC4 type (RING finger) 175 213 IPR018957 GO:0046872
Vifa1g03800 721 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 538 663 IPR013083 -
Vifa1g03800 721 MobiDBLite consensus disorder prediction 681 697 - -
Vifa1g03800 721 SMART ring_2 551 608 IPR001841 -
Vifa1g03800 721 SMART ring_2 59 101 IPR001841 -
Vifa1g03800 721 SMART ring_2 175 213 IPR001841 -
Vifa1g03800 721 Pfam SAD/SRA domain 308 456 IPR003105 -
Vifa1g03800 721 ProSiteProfiles Zinc finger RING-type profile. 551 609 IPR001841 -
Vifa1g03800 721 MobiDBLite consensus disorder prediction 133 162 - -
Vifa1g03800 721 SUPERFAMILY PUA domain-like 279 472 IPR015947 -
Vifa1g03800 721 MobiDBLite consensus disorder prediction 634 705 - -
Vifa1g03800 721 FunFam E3 ubiquitin-protein ligase ORTHRUS 2 276 471 - -
Vifa1g03800 721 SMART G9a_1 300 457 IPR003105 -
Vifa1g03800 721 Pfam RING-type zinc-finger 551 588 IPR027370 -
Vifa1g03800 721 ProSiteProfiles Zinc finger RING-type profile. 175 214 IPR001841 -
Vifa1g03800 721 MobiDBLite consensus disorder prediction 637 673 - -
Vifa1g03800 721 SUPERFAMILY RING/U-box 541 620 - -
Vifa1g03800 721 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 124 242 IPR013083 -
Vifa1g03800 721 SUPERFAMILY RING/U-box 166 223 - -
Vifa1g03800 721 Gene3D - 276 474 IPR036987 -
Vifa1g03800 721 SUPERFAMILY FYVE/PHD zinc finger 48 105 IPR011011 -
Vifa1g03800 721 ProSitePatterns Zinc finger PHD-type signature. 59 101 IPR019786 -
Vifa1g03800 721 FunFam Predicted protein 137 240 - -
Vifa1g03800 721 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 110 IPR013083 -
Vifa1g03800 721 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 45 646 IPR045134 -
Vifa1g03800 721 CDD RING-HC_ORTHRUS_rpt1 173 218 IPR047498 -
Vifa1g03800 721 SMART PHD_3 58 102 IPR001965 -
Vifa1g03800 721 ProSitePatterns Zinc finger RING-type signature. 566 575 IPR017907 -
Vifa1g03800 721 Coils Coil 622 649 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03800 Vifa-Chr1 585463692 585467837 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03800 49 638 C2H2 Transcription Factor Family AT5G39550 60.762 0.0 715
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03800 K10638 - gmx:100781044 909.827