Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03778 ATGGCTAAGTGGAAGAATCACACCGCTCACAACCAGTCTTACAAGGCTCACAAGAATGGCATCAAGAAGCCCAAGAGACATCACCACACTTCCACTAAAGGGATGGATCCAATGTTTTTGAGGAACCAGAGGTATGCAAGGAAGCACAACAAGAAACTTTGGAAAGTTGTTTCTGATGCAGAGCGAACATACTTATTTTTAGTAGAGTTCAGAGTTCCTCCTTATTTAAGTTCTGACAAATTAAGTCACGAGTTCATACAGATCGGTGAGTCGGTTGGTCCTGAGTGTAAAGAGATTACGCCAAGAGATTTCAGCCAGGTCTCGATCGAAGGCTCAAGCTCCACAGAAAACTGGAAGCAAAGGTTGGTGGCATGTAGAATATTGCTTCCATTCTTCAAGTCATTTCATAGAGAACCAACAGCTGTCATTCCTTCGGTACCATACATCTGCGAAGACATCATCATCTCCTGTCCCGTGACTGTTTCTCTATTGTAA 495 0.4323 MAKWKNHTAHNQSYKAHKNGIKKPKRHHHTSTKGMDPMFLRNQRYARKHNKKLWKVVSDAERTYLFLVEFRVPPYLSSDKLSHEFIQIGESVGPECKEITPRDFSQVSIEGSSSTENWKQRLVACRILLPFFKSFHREPTAVIPSVPYICEDIIISCPVTVSLL 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03778 164 Gene3D - 1 62 - -
Vifa1g03778 164 PANTHER 60S RIBOSOMAL PROTEIN L29 1 55 IPR002673 GO:0003735|GO:0005840|GO:0006412
Vifa1g03778 164 Pfam Ribosomal L29e protein family 3 42 IPR002673 GO:0003735|GO:0005840|GO:0006412
Vifa1g03778 164 MobiDBLite consensus disorder prediction 1 30 - -
Vifa1g03778 164 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03778 Vifa-Chr1 583720728 583723058 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03778 1 61 Cytoplasmic Ribosomal Protein Gene Family AT3G06700 75.410 4.65e-27 95.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03778 K02905 - gmx:100499874 110.538