Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03777 ATGGCTAAGTGGAAGAATCACACCGCTCACAACCAGTCTTACAAGGCTCACAAGAATGGCATCAAGAAGCCCAAGAGACATCACCACACTTCCACTAAAGGGATGGATCCAATGTTTTTGAGGAACCAGAGGTATGCAAGGAAGCACAACAAGAAACTTTGGAAAGTTGTTTCTGATGCAGAGTCTCGATCGAAGGCTCAAGCTCCACAGAAAACTGGAAGCAAAGGTTGGTGGCATGTAGAATATTGCTTCCATTCTTCAAGTCATTTCATAGAGAACCAACAGCTGTCATTCCTTCGGTACCATACATCTGCGAAGACATCATCATCTCCTTCAGTCACCACAAAAAATACAAAAGACAAGTCCTCTCTTAAGAGAAGACCCTGCTAA 390 0.4359 MAKWKNHTAHNQSYKAHKNGIKKPKRHHHTSTKGMDPMFLRNQRYARKHNKKLWKVVSDAESRSKAQAPQKTGSKGWWHVEYCFHSSSHFIENQQLSFLRYHTSAKTSSSPSVTTKNTKDKSSLKRRPC 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03777 129 MobiDBLite consensus disorder prediction 103 129 - -
Vifa1g03777 129 MobiDBLite consensus disorder prediction 103 118 - -
Vifa1g03777 129 MobiDBLite consensus disorder prediction 1 38 - -
Vifa1g03777 129 MobiDBLite consensus disorder prediction 51 74 - -
Vifa1g03777 129 Gene3D - 1 67 - -
Vifa1g03777 129 MobiDBLite consensus disorder prediction 1 30 - -
Vifa1g03777 129 Pfam Ribosomal L29e protein family 3 42 IPR002673 GO:0003735|GO:0005840|GO:0006412
Vifa1g03777 129 PANTHER 60S RIBOSOMAL PROTEIN L29 1 55 IPR002673 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03777 Vifa-Chr1 583720617 583723058 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03777 1 61 Cytoplasmic Ribosomal Protein Gene Family AT3G06700 75.410 3.12e-27 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03777 K02905 - gmx:100499874 110.538