Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03773 ATGGCATCGTCAACCCCTCAAGTCATAACCTGCAAAGCTGCAGTGGCATGGGCAGCGGGAGCGCCATTGGTACTCGAGGATGTAGAAGTCAGTCCTCCCCAACCATTCGAGATTAGGATTAAGGTTCTCTCCACCTCTCTATGTCGCAGTGATCTCTCTGCTTGGGAATCTCATGCTATATTTCCTCGCATATTTGGCCATGAAGCATCTGGGGTTGTAGAAAGTGTAGGGCTAGGAGTGACTGAATTCAAAGAAGGGGACCATGTGCTAACAGTTTTCATTGGAGAATGCATGTCATGCAAGCCGTGCAAATCAGGAAAAACTAATATTTGTCAAGTTTTGGGATTGGAAAGAAAGGGTTTAATGCATAGTGATCAAAAGACTAGATTCTCAATAAAAGGGAAGCCTGTTTATCATTATTGCGGTGTTTCAAGTTTTAGCGAATACACAGTTGTCCATTCTGGATGTGCAGTGAAAGTTAGTCCTCATGTACCTCTCGACAAAATATGCCTTCTAAGCTGTGGCGTCTCTGCAGGTCTGGGTGCAGCATGGAATGTTGCCGATGTGACAAAAGGATCAACAGTCGTTATATTTGGTCTTGGAACTGTTGGCCTTTCTGTTGCTCAAGGTGCTAAACTAAGAGGTGCATCTAGAATAATTGGTGTCGATAACAATACACAGAAGTGCGAAAATGCTAAATCTTTTGGGGTTACGGAAGTTGTTGATCCGAATTCGTACAATGAACCTATCGTGCAGGTTATTAAGCGCATTACTGATGGTGGAGCCGATTTCTGTTTTGAATGCGTCGGTGACACTGATATGATAACAACTGCATTGCAATCATGTTGTGATGGATGGGGTTTGACTGTAACACTTGGTGTGCCGAAGGTGAAGCCTGAGATGTCAGCTCATTACGGACTATTCTTGACAGGAAGAACATTGAAAGGATCGCTATTTGGAGGATGGAAACCTAAAACTGATCTTCCTTCACTAGTAGAAAAATATGTGAACAAGGAAATTGAGATTGATGACTACATAACACACAATTTGGCATTTGATGACATTAACAAAGCTTTCAATCTCATGAAACAAGGAAACTGTCTTCGTTGTGTTATCCACATGCCAAAATAA 1131 0.4235 MASSTPQVITCKAAVAWAAGAPLVLEDVEVSPPQPFEIRIKVLSTSLCRSDLSAWESHAIFPRIFGHEASGVVESVGLGVTEFKEGDHVLTVFIGECMSCKPCKSGKTNICQVLGLERKGLMHSDQKTRFSIKGKPVYHYCGVSSFSEYTVVHSGCAVKVSPHVPLDKICLLSCGVSAGLGAAWNVADVTKGSTVVIFGLGTVGLSVAQGAKLRGASRIIGVDNNTQKCENAKSFGVTEVVDPNSYNEPIVQVIKRITDGGADFCFECVGDTDMITTALQSCCDGWGLTVTLGVPKVKPEMSAHYGLFLTGRTLKGSLFGGWKPKTDLPSLVEKYVNKEIEIDDYITHNLAFDDINKAFNLMKQGNCLRCVIHMPK 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03773 376 PANTHER ALCOHOL DEHYDROGENASE 7 372 - -
Vifa1g03773 376 Pfam Alcohol dehydrogenase GroES-like domain 37 159 IPR013154 -
Vifa1g03773 376 SUPERFAMILY GroES-like 325 373 IPR011032 -
Vifa1g03773 376 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 164 338 IPR036291 -
Vifa1g03773 376 FunFam S-(hydroxymethyl)glutathione dehydrogenase 179 317 - -
Vifa1g03773 376 Gene3D - 14 369 - -
Vifa1g03773 376 SUPERFAMILY GroES-like 5 184 IPR011032 -
Vifa1g03773 376 Gene3D - 179 317 - -
Vifa1g03773 376 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 66 80 IPR002328 GO:0008270|GO:0016491
Vifa1g03773 376 Pfam Zinc-binding dehydrogenase 203 324 IPR013149 -
Vifa1g03773 376 FunFam Alcohol dehydrogenase 6 14 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03773 Vifa-Chr1 582945833 582948453 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03773 37 174 Monolignol Biosynthesis Gene Families AT4G37990 28.169 1.57e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03773 K00001 - gmx:100819938 691.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g03773 1 582945833 582948453 Vifa1g03773 1 582945833 582948453 ECH