LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa1g03767	ATGATAGCAAGTGAGTGGCTTTATGACATATGCCGCGAGCAGTTATTTTCTCTTACTTTTAAAATTTCAACTCTGTCACATGAGGGTGAGTTTGATTTGGATATGACATACATCACTGACAATAAAATAGCTATGGGATTTCCTGGTTTTGTTCATACTTTACACATAAACAACCCATTATGTACAAAACTGTTTGACAGTTACTGTCCACATTATAATAAAGATGTTGATTCTGTACAGAGAACTTTGAATTCGAAGCCACATGTTGCAAATACCTTTTCCTTCTCTAAATATGATATGGAGAAAGTTCAGGAAAAAAGTTGTGAGGAGATTTTCTTGAAGAAAAAAGTGCATACATTTGAGAGAAGACATCACACCTGCCTTCATCGAGTCGTTTTCTTCATAGATGAAATGAGATTCATCACTCTCTTGGAGAGCGCACTCAAGTCTTGCAGGATCTGTGTTTTTCCAGTGGAAGACAAGATCATGGATATTGCTTCCTTTGAGAAGTTTCTTCAAGAAATAATCAAGGTGGGTGGCAAAGTTGATGCTCTTGGTGATTCTGACACCGTTACCAGGGAGAAATTCAAGATTACTGTTACCTCTCACAGCAACTTTTCTAAGCGTTATTTGAAGTATTTTATCAAGAAATATTTGAAGAAACACGCTCTGAGAGATCGGCTTATATATACTGCCTCAAAGAAAATAGATATATCTATGAGCTGA	726	0.3636	MIASEWLYDICREQLFSLTFKISTLSHEGEFDLDMTYITDNKIAMGFPGFVHTLHINNPLCTKLFDSYCPHYNKDVDSVQRTLNSKPHVANTFSFSKYDMEKVQEKSCEEIFLKKKVHTFERRHHTCLHRVVFFIDEMRFITLLESALKSCRICVFPVEDKIMDIASFEKFLQEIIKVGGKVDALGDSDTVTREKFKITVTSHSNFSKRYLKYFIKKYLKKHALRDRLIYTASKKIDISMS	241

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa1g03767	241	Gene3D	Protein tyrosine phosphatase superfamily	19	147	IPR029021	-
	Vifa1g03767	241	Pfam	Ribosomal L22e protein family	154	235	IPR002671	GO:0003735\|GO:0005840\|GO:0006412
	Vifa1g03767	241	PANTHER	60S RIBOSOMAL PROTEIN L22	154	235	IPR002671	GO:0003735\|GO:0005840\|GO:0006412
	Vifa1g03767	241	FunFam	60S ribosomal protein L22-2	146	239	-	-
	Vifa1g03767	241	Gene3D	-	148	241	IPR038526	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa1g03767	Vifa-Chr1	581840696	581842664	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa1g03767	154	235	Cytoplasmic Ribosomal Protein Gene Family	AT3G05560	69.512	4.59e-23	89.0

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa1g03767	K02891		-	rcu:8278743	108.227