Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03760 ATGGAGAAAAACTCAGATGAAGAAGCTTTCCTTTTTGCCATGGAACTATCATTTGCTTCTTCTGTTCCAATGGTTCTGAAAACAGCATTGGAACTTGGAATCATTGAAATCATAGCCAAATCTGGCCCTAATGCTTACCTCTCATCTTCTCAAATTGCTTCTCAAATTCCTTCTATAAAAAATCCAGATGATGCACCTTCTATGTTGGACCGATTGTTGCGTCTTTTGGTTAGCTACAAAATACTTACTTGCTCCATCCAACATCAAAGTGGTGATTCTAATGAAGAAAGATTGTATGGTCTTCACCCTTTAGCTAAATACTTTGTCAAAAGTAATAATGAAGATGCACATGGTGCCTCCATGAGTTCCTTCTTTCTCATGCAACACGACATAGTCCTTAAAGATATGTGGTACCACTTAACAGATTCAATTAAAGATGGTGGACTTCCATTTAATAATGCTTTTGGAATGAATGTTTTTGAGTTTCATGCCATAAATCCAAGGTTTAACAACCTTTTCAACAAGGGTATGTCTGATTCCTCTAGTCTCATAATGATGAAAATTCTTGAGACATATTCGGGTTTTGAGGGTCTTGTATCTGTTGTTGATGTTGGTGGTGGGATTGGAACTGTTACTTACATGATTGTCTCTAAATATCCCAACATTAAAGCCATTAATTTTGATTTGCCACATGTCATCAACGAAGCTCCATCTTATCCAGGTGTCGAGCATGTTGGAGGAGATATATACTGGAAAGGTGGAAAAGAAAGAACACAGAAAGAGTTTGAGGCTTTGGCTAGGGGAGCTGGATTTCAAGGTTTCCAAATTGCATGTTGTGCTTTCAATATGTATGTTATGGAGTTTCTTAAAAATGCTTAA 879 0.3709 MEKNSDEEAFLFAMELSFASSVPMVLKTALELGIIEIIAKSGPNAYLSSSQIASQIPSIKNPDDAPSMLDRLLRLLVSYKILTCSIQHQSGDSNEERLYGLHPLAKYFVKSNNEDAHGASMSSFFLMQHDIVLKDMWYHLTDSIKDGGLPFNNAFGMNVFEFHAINPRFNNLFNKGMSDSSSLIMMKILETYSGFEGLVSVVDVGGGIGTVTYMIVSKYPNIKAINFDLPHVINEAPSYPGVEHVGGDIYWKGGKERTQKEFEALARGAGFQGFQIACCAFNMYVMEFLKNA 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03760 292 Pfam O-methyltransferase domain 137 250 IPR001077 GO:0008171
Vifa1g03760 292 PANTHER O-METHYLTRANSFERASE 14 249 IPR016461 GO:0008168
Vifa1g03760 292 Pfam Dimerisation domain 24 77 IPR012967 GO:0046983
Vifa1g03760 292 SUPERFAMILY "Winged helix" DNA-binding domain 4 111 IPR036390 -
Vifa1g03760 292 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 14 292 IPR016461 GO:0008168
Vifa1g03760 292 Gene3D Vaccinia Virus protein VP39 253 280 IPR029063 -
Vifa1g03760 292 Gene3D Vaccinia Virus protein VP39 113 250 IPR029063 -
Vifa1g03760 292 Gene3D - 1 108 IPR036388 -
Vifa1g03760 292 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 119 288 IPR029063 -
Vifa1g03760 292 FunFam Caffeic acid 3-O-methyltransferase 1 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03760 Vifa-Chr1 581377803 581385077 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03760 253 291 Monolignol Biosynthesis Gene Families AT5G54160 56.410 5.41e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03760 K13066 - pop:7493466 298.13