Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03754 ATGATGACAATTATGAAGATTATCGCAATGAATCTGATATACAAATATCTCCCCGACATAGTGGACATACCCCGTGGATCTCCTTCAGTCACTTGTCTATACATGTTATATGAAATTCATGATGGCAAGGAAGTAAGGAATTCGGCAACTTCAGCAGGCGAGGGAACAGATCCGATAGAAGATACAGAAAGCTTCATCATCAGCCTCATGATTTTGTATGCAAATATATGGAAGTCATCTTCAAGTCTCCGATTCAAAGCTCATACAGCTTTCCTGGTGCTAATAATCACTTATGTCTATTCATTCTTCTTTGACAAAGTGGTGAATGGGAAACCAGATGCATATAGTCTCGTTTCATGTGCTTCCTTTGCTATCATGTCACTCAGTTCGTCACGGCGAACTCATTGCGGAGTTGAAATTGATCTTCTCTACTTCTTCCTCGGATGTCTAATTGTGAAGCTCATGAAGATTAGCTTGCAGTTACTCATTCTTGGAGCAGGTTTCAGCTACTCCCTTATTATTCTTCGTTCTTCACTCTCTTCAACAGATGATGGAATAGAAAACGAGTATTTTGACCCGCAAGGTGAAAATTCACTTGTCCTTGAAATGGATTCATTACTACTGGAACAGCTTAAAACTTGTATGAAGGGAATTGAAGAGGAGAATTTGAATCTCGTAGACAGGCTTATGGAGCTCGTGAAGGAATACAATCTAGATAAGAGTGAATTACATTTACTCGGTAAGTCTGATTATGTAATGGATTCTCTGTCATCAAGAAAGATCCATAATCTTAATGAAACAGTGAAGTTGATGGTAGCAATTGGTTATAAGAAAGAGTGTTATGATGTGAATAGTAGTTGGCGCAAGGTATTCTTGAAGGTGTGTCTCAAAAGCGAAATATTTGGGTCGCCAACGGAAAACATCAATTCCATCCATGAGTATGAAAGAGAGAAATATTTAGATATTATGTTTGATAGATGGATGAGTGCTTTGGATGTAGCTATGATAATGTTGTTTCCCATTGAACAGAAACTCTGCAATCGTGTCTTCTTGGGGTTTTCCTCGGCAGCTTCTAGTTGCTTCTTTGAGGTTTGCAAAGAATCAACGTCTCAGCTGCTGTGTTTTGCAGATACAATTGCTTCTGGGAGCCCTACGAAATGGCGTTTGTTCAAAATGCTTCAAATATTCGGGAATTTGGGTAATCATATTCCAAGATTCCAATCTCTTTTCTTGGATTCGACTTTACTGAACGAAGCAATCGCAGTTAGGAATAGATTAGGAGAAGCTAGCAGGGATCTTTTCATGGAAATGCATAATGTTATTTTCGGAGTTCCTGCAGCAAAGGAAACTGTTCTGACTCACGGTCTTCACCGAATTACTTTTGAGGTCATGAGCTACGCGTCTCTTGCTTGCATATGGAGCAGATAA 1428 0.3929 MMTIMKIIAMNLIYKYLPDIVDIPRGSPSVTCLYMLYEIHDGKEVRNSATSAGEGTDPIEDTESFIISLMILYANIWKSSSSLRFKAHTAFLVLIITYVYSFFFDKVVNGKPDAYSLVSCASFAIMSLSSSRRTHCGVEIDLLYFFLGCLIVKLMKISLQLLILGAGFSYSLIILRSSLSSTDDGIENEYFDPQGENSLVLEMDSLLLEQLKTCMKGIEEENLNLVDRLMELVKEYNLDKSELHLLGKSDYVMDSLSSRKIHNLNETVKLMVAIGYKKECYDVNSSWRKVFLKVCLKSEIFGSPTENINSIHEYEREKYLDIMFDRWMSALDVAMIMLFPIEQKLCNRVFLGFSSAASSCFFEVCKESTSQLLCFADTIASGSPTKWRLFKMLQIFGNLGNHIPRFQSLFLDSTLLNEAIAVRNRLGEASRDLFMEMHNVIFGVPAAKETVLTHGLHRITFEVMSYASLACIWSR 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03754 475 PANTHER EXOCYST COMPLEX PROTEIN EXO70 177 471 IPR004140 GO:0000145|GO:0006887
Vifa1g03754 475 SUPERFAMILY Cullin repeat-like 211 469 IPR016159 -
Vifa1g03754 475 Pfam Exo70 exocyst complex subunit 326 471 IPR046364 GO:0000145|GO:0005546|GO:0006887
Vifa1g03754 475 Coils Coil 215 235 - -
Vifa1g03754 475 Gene3D Exocyst complex component Exo70 194 475 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03754 Vifa-Chr1 581034183 581036380 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03754 250 471 EXO70 exocyst subunit family AT5G58430 44.444 7.70e-48 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03754 - - mtr:11426486 375.17