Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03753 ATGTCCTCATGCGTCACTATTCTTCGAACATCTCTCATCTTCCAACTTCGAACATCTCTCATCTTCCAACCGGTGCTTTTTGTTTCACCCGAGCGGTTTTTGAATAAGGAGTTTCTGTCTGCTATCTCTGCTGGGTCAGCTGTCTCACTCGTTGTTATTGACGAAGCACATTGTATATCTGAATGGTCTCACAATTTCCGACCTTCATTCATGAGACTTAGAGCATCACTACTTCATAGAAGTCTTAATGTAGGTTTTGTTCTCGCAATGACAGCAACTGCTACAACCACAACCTTAGATGCCATCATGTCTGCCCTAGATATTCCTTTTACAAATCTTATTCAGAATGCACACTTAAGGGACAATTTGCGTTTGTCGGCGTCTTTGATAAAAAATAGAATGAAAGACCTACTGGTTCTGATAAAGTCTCCTCCTTTTGCGGATGTTAAAGGCATCATAGTATACTGCAAATTTCAGTCTGAAACTGATCAAATTAGCAGATACTTGAATGATAACAATATCTCGGCAAAGAGTTATCATAGTGGTATTTTTGCAAAGGAACGTGGCAACGTACAGGAGTTGTTTGCTTCAAACAAGATCAGAGTGGTTGTTGCAACTGTGGCATTTGGTATGGGACTAGATAAAAGAGATGTTGGAGCAGTAATTCATTACAGTTTACCTGGAAGTCTGGAAGAGTATGTACAGCTTAAATGGCTGGCAGAGGATATGGACGAGGACGAGGACGCGGCGGATTTCAAAATTATGCACGACCAGAGCCATTTGTACTTTTTCCCGAGGAGAAGGGTCTCTATGGACAATGATAGTTGCCATGATTGTACATTGATCAAGATTGATAGTGTCAATAAACCAGGAATTCTGCTGGAAGTCGTACAAATCCTAACAGACCTTGACTTCATAATCACCAAAGCTTACATATCTTCTGATGGTGGATGGTTTATGGATGGGAGTTATGCCAGATGGTAA 984 0.4085 MSSCVTILRTSLIFQLRTSLIFQPVLFVSPERFLNKEFLSAISAGSAVSLVVIDEAHCISEWSHNFRPSFMRLRASLLHRSLNVGFVLAMTATATTTTLDAIMSALDIPFTNLIQNAHLRDNLRLSASLIKNRMKDLLVLIKSPPFADVKGIIVYCKFQSETDQISRYLNDNNISAKSYHSGIFAKERGNVQELFASNKIRVVVATVAFGMGLDKRDVGAVIHYSLPGSLEEYVQLKWLAEDMDEDEDAADFKIMHDQSHLYFFPRRRVSMDNDSCHDCTLIKIDSVNKPGILLEVVQILTDLDFIITKAYISSDGGWFMDGSYARW 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03753 327 Pfam Helicase conserved C-terminal domain 150 236 IPR001650 -
Vifa1g03753 327 Gene3D - 120 237 IPR027417 -
Vifa1g03753 327 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 23 236 IPR027417 -
Vifa1g03753 327 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 49 58 IPR002464 -
Vifa1g03753 327 SUPERFAMILY ACT-like 276 323 IPR045865 -
Vifa1g03753 327 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 112 IPR014001 -
Vifa1g03753 327 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 133 304 IPR001650 -
Vifa1g03753 327 Gene3D - 6 110 IPR027417 -
Vifa1g03753 327 PANTHER DNA HELICASE RECQ FAMILY MEMBER 23 235 - -
Vifa1g03753 327 SMART helicmild6 163 237 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03753 Vifa-Chr1 580565263 580570286 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03753 153 234 Eukaryotic Initiation Factors Gene Family AT3G19760 29.268 9.15e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03753 K10730 - gmx:100811214 336.65