Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03751 ATGGTTTTGTTTTTTCTGTCATTGAACATAGTTTTCTGTATTGAAATTGAAATCAAGGATTTTTATCCACAAGAAAGTTATGCTTTGTTACTCATAAGAGATTCATTAAATTCTTCTTCTGTGGATTTGCATGGAAATTGGACAGGACCACCTTGTATAAACAATAGTAGTAGATGGTTTGGTATCACATGTTCAAATTGGCATGTTGTGGATATTACAACTCAAGGTGTTGATCTTAGTGGCTATTTACCTTCAACGTTCCTTCAAAACATAACTTTCTTGAGGCGAATTGATTTCAGAAACAATGCACTTTTCGGACTATTGCCGAATCTCACAGGTTTGGCTTTCTTAGAAGAAGTGAAGCTTTCTTTTAATCATTTCACAGGGTCAATTCCTTTGGAGTATGTTGAGTTGCTTGGTCTTGAAGTTTTGGAGCTGCAAGAGAATTACTTAGATGGTGAAATTCCACCTTTTGATCAACCATCATTGAGAAGTTTCAATGTTTCATATAATCATTTGGTAGGGAAAATTCCTCAAACTTCTTTGCTTCAAAGGCTTCCAAAAAGTGCTTTTGATGATAATTCTGAACTTTGTGGAAAGCCATTGGATATGTTATGTCCTCCTTCGATGGAGAAAAATAAGAAAAAACTTCAAGTTTGGATTATTGCTTTGATTGCTATTGGAGCTTTTTTGTTTCTTTTTCTTATGATTATTGCTTTCTTGTTTTGTAAAAGAAAAGCTAGAGGAAATGAAACAAGAAGAAATGGTTCATCAAGATATGTTTTTGGAGCATGGGCATCTAATGTAGGGAACAGTGAAGATTCTGGAAGATTAGGCCAATTAGAATTTTTCGACAAGAAACTTCAAGTTTTCGACATGGATGATTTGTTAAGAGCATCAGCAGAAGTGGTAGGAAGAGGAGAATTTGGTGTTACATATAAAGCAACACTTGAAACTGAAGATCAAAAGCTTATCATATATGAAGTTGTCTCTGACTGCACTTTGTTTGAACTCCTACATGAGGGAAGAGGAATTGGAAGAATACCACTTGATTGGAGCACAAGACTTTCAATTATCAAAGACATAGCAAAAGGACTTGATTTCCTTCACCAATTTTTACCTTCACACAAAGTTCCTCATGCAAATCTCAAATCATCAAATGTCCTAATCCATCAAACCAACCAAGGTTACCATTCCAAGCTCACTGACTATGGATTCTTGTCATTACTCTCATCATCCAACAAAAATGCAGAAAAGCTATCAATAAGCAAGTCACCAGAATTCGTTAAAGGGAAAAAGCTGTCACACAAAACCGATGTATATTGTTTTGGAATCATTATGCTAGAGATTATAACTGGAAAAATTCCTGGAGGTGGTGAAGTTGAAGAAATAACGAGTAATGATCTTTCGGATTGGGTTAGAACTGTGGTGAATAATGATTGGTCTACTGATATATTGGATTTGGAAATATTGGCTGAAAGAGAAGGACATGAAGCAATGTTGAATCTTACTGAGATAGCTTTAGAGTGTACTGATTTGATGCCTGAGAAAAGGCCTAAGATGAGTGTAGTGTTCAAGAGAATTGAAGAGATGGAACAAATGATAATAGAGAATGATTGA 1620 0.3512 MVLFFLSLNIVFCIEIEIKDFYPQESYALLLIRDSLNSSSVDLHGNWTGPPCINNSSRWFGITCSNWHVVDITTQGVDLSGYLPSTFLQNITFLRRIDFRNNALFGLLPNLTGLAFLEEVKLSFNHFTGSIPLEYVELLGLEVLELQENYLDGEIPPFDQPSLRSFNVSYNHLVGKIPQTSLLQRLPKSAFDDNSELCGKPLDMLCPPSMEKNKKKLQVWIIALIAIGAFLFLFLMIIAFLFCKRKARGNETRRNGSSRYVFGAWASNVGNSEDSGRLGQLEFFDKKLQVFDMDDLLRASAEVVGRGEFGVTYKATLETEDQKLIIYEVVSDCTLFELLHEGRGIGRIPLDWSTRLSIIKDIAKGLDFLHQFLPSHKVPHANLKSSNVLIHQTNQGYHSKLTDYGFLSLLSSSNKNAEKLSISKSPEFVKGKKLSHKTDVYCFGIIMLEIITGKIPGGGEVEEITSNDLSDWVRTVVNNDWSTDILDLEILAEREGHEAMLNLTEIALECTDLMPEKRPKMSVVFKRIEEMEQMIIEND 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03751 539 Gene3D Ribonuclease Inhibitor 22 208 IPR032675 -
Vifa1g03751 539 Gene3D Transferase(Phosphotransferase) domain 1 331 538 - -
Vifa1g03751 539 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 4 318 IPR046959 -
Vifa1g03751 539 SUPERFAMILY L domain-like 24 189 - -
Vifa1g03751 539 ProSiteProfiles Protein kinase domain profile. 219 535 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g03751 539 Pfam Protein kinase domain 311 522 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g03751 539 SUPERFAMILY Protein kinase-like (PK-like) 302 532 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03751 Vifa-Chr1 580494458 580497220 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03751 28 532 Receptor kinase-like Gene Family AT1G48480 31.672 1.12e-80 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vifa1g03751 Pkinase 8e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03751 - - gmx:102668068 728.398