Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03738 ATGAAAAACTCTTCATCTACTTCTTTCAACCACGGTTGGACATATGATGTGTTTGTGAGTTTCTACGGCGATGACACTCGTTACGGTTTCACAGGCAATCTTTATAATACCTTGCGCCGAAAGGGAATCAACACTTTCAAAGATGACATCAAACTGAAGAAAGGAGAAGAGATTTCAGAAGATCTTCTCCAAGCAATTGATGAGTCTAGGATTGCCATAATTGTTTTCTCAGAAAATTATGCATCCTCAACTTGGTGTCTTGATGAACTTGTCAAGATCATGGAGTGTAAGAAAGAAAAAGGACAACTGGTTCGTCTAGTTTTTTACTATGTTGACCCTTCAAATGTCAGGCATCAGAGGGAAAGTTTTGGAAGGTCAATGGCTAAGCATGAAGAAAATATCAAAATTAGTAAAGAAAAAGTATGTAAGTGGAGAAGTGCACTCTCATCAGCTGCAAATTTATCAGGATGGCATTTCAAAAATGGGTATGAGTATGAATTAATTCAAAAGATCACCGAAGAAGTATCGAATAAATTAAATGTAACACCCTTACACATAGCTGATAATCCAGTTGGATTGAATTACAAAATGTCTCAAGTGTTATCACTTCTAGAAATAAAGTCTAATGATGATGATGTTTGCATGGTTGGAATTTGTGGAATTGGTGGCATTGGTAAAACAACACTAGCTAGAGCAGTATATAACTCAATTTCTAGAAAGTTTGATAGCTCAAGTTTTCTTGTTGATGTAAGAGAAAATTCAATGAAACATGGTCTAGTACACTTGCAAGAGACCCTTTTGCTTCATTTGCTAGACGAAAATATCAAACTGGATGATGTGAGCAAAGGAATTCCAATATTAAAAAGACGGCTTCGCAATAAGAAGGTTCTTTTCATTCTCGACGATGTCGATAATCTTCAACAGTTAAGATCATTGGTTGGAAGAAATGATTGGTTTGGTTTTGGAAGTAGGATTATCATAACAACCAGAGATAAACATTTGTTAACTACCCATGGAGTTGAAAAAGAAAAACTATATGAAGTGAAAGAACTGAATGATCGTGAATCTCTTGAGCTTTTTAGTATGAACGCTTTTAGAAAAAGTGTGCCTGATCCAAGTTATGTGGAGATAGCAAAAAGTGTAATGCAATATGCAAAAGGTCATCCATTAGCTTTGAATGTAATAGGATCTGATTTATTTGGCAAAACCGTAGAAGAATGGAAGAGTGCGTTGAATAAATATGAAACAATCCCAAGCAAAGAGATTCTCAATGTCCTTAAAGTAAGCTATGACAATTTGGATGATAATGAAAAGGAAATTTTCCTTGACATTGCTTGTTTCTTCAAAGGATATCCGAAGGCAGATGTGGAAAAGACACTAGATGAAAGTCGGTTTTATTCGAAATATGGCATTGGAGTACTTGTCGACAAATCTCTTGTAACAATTGGTGAATCCAATTCAGTAAAGATGCATGATCTTGTACAAGACCTTGGTAAAAACATTGCTAGAAATGAGTCGCCGTTTGATCCGAGCAAACGCAGAAGACTATGGCATCATGAGGATGTTTTTGAAGTCTTGACAGAAAGCACAGGAAGTGATACAATTGAAGGCATTGTGTTGGATATGCCTAGCCTAAAACAAGAAGTTCAATTAAAAGCCAACACCTTTGATAATATGCGAAGGCTTAGAATCCTCATAGTTAGGAATGGACAAGTTTCTGGAGCACCTCAATACCTTCCGAATAACTTGAGATTGCTTGAGTGGAACAAATATCCTTTAACATCTCTACCTGATAATTTTCATCCAAAGACACTTGTTGTACTCAACTTACCAAAGAGTCGTATAAAAATGGATGAGCCATTCAAGAAGTTTGAGCATTTGACCTTTATGAACTTCAGTGATTGTGACTCTCTAACAAAACTACCTGATGTATCTGCAACCCCAAATCTAACAAGAATTCTCGTTAATAATTGTCAAAACTTGGTTGACATTCATGAATCTGTTGGAGATCTTGACAAACTAGTCACATTAAGCACTGAAGAATGCCCTAAACTCAAGAGTTTTCCGCGTGGCCTGAGATCAAAATATCTGGAATACCTTAATCTTAGAAAGTGTTCGAACATTCAAAGTTTCCCAGATGTATTGGCAAAAGTGGAAAATATGAAAAATATTGACATCGGAGGGACAGCCATAAAAAAATTTCCTAGTTCAATTGAAAACTTCAAAGGCCTTGAAGAGTTAGTATTGACATCATGCACAAACGTTGAAGATCTACCTAGTAACACAGATATGTTTCAAAGTATTGAAGAGCTGAATGTGGAAGGATGTCCTCAACTTCCAAAACTCCTGTGGAAGTCATTGGAAGACAGGACTAATGATTGGCTTCCAAAGTTGAGCAATCTGAGTCTAAAGAATTGTAATCTGTCAGATGAAGATCTTGAGTTAATTCTCAAATGTTTTCTACAATTAAAATGGTTGATCCTATCCGATAACAACTTCTTGACCATTCCTGATTGCATTGAAGACCTTTCTCATCTCTTGCTTCTTAACATAGAAAACTGCAAGCATCTTAGAGATATTTCAGTGCTTCCGCCATATTTGCAATATATAGATGCAAGGAAGTGTATGGCATTGACTCCTCAATCATCAGACGTATTATTGAGCCAGGCATTTCTGGAAGTTGAGTACATAGACATAGTTGTTCCAAGGAAAAAAATTCCGAGTTGGTTTGATCATTGTAATAAAGGAGAGTGTGTCGCCTTTTGGATTCGTAAAAGCTTCCCTACAATCGCTCTGTTTTTTCTTTTATGTGGTGATGATGATGAAAGGAAAACAAATTATACATGTGAATTCTGCGTACTAATAAATGGCATACAAGTATTCCAAGGAAGAAGCGAGTGGCCAGTTGATCATATATGGCTTTTTGATCTGCGAACTCACCTCACCGGGAGTGAGTGGCAAGGCTTCAATGAAAAAATAAAATCTAGTTGGAATCATGTGGAGATTTCATGTTCAGTCATTGATGAGTCAAAAAATTTAACTATAAAATGTTGTGGAATTCATCTATACAAAGATAGAATGAATATTCACCATGTCTCCTTCATAAGTCCCGATCTTCAAAGCTCAAATATGGCCCGTGATAATGATGGTTTTGATATCTATGATGAAGTCAGCGATGATGTTGTTTTTCCTTCAATATTTTCTAAATATTTTAACAAGACTATATTAGAGGCCATGAGTGATCTTCAATCCAGCAAGAGAAAAGTTGATAATGAATATGACTTTGATGAGGAGTTGGAAATAGACAGTGACACTGACATTGACTGCCAGTACATGGAAGAGGAACACAATTCATCTTCCCTCAATCATCAAATCTTAGAAATGTTTGAACCTGTGTTAAACGACAATGAAAAAGATGCCAATTCCAGCAAAATCTCGCTTGATCCTTCGACTGAAACAGAAGAAGAACCCCTTGTTACAAGTATCTGGAATCAAGTACCATTACATCAAACAAGCACAGACAAGGGAACACAGTTAGTTGAACAAATCGAAGTTGATTCAACAAAAAGAAAACAACTTATCTTAAATGCAGAGTCCACCATAAATAAAGACAATATGGAAGAATTTTATGCTTCGCTTGAAGCAGAAATAACTTCTTCTTTACAAGTTCTACCAGACAACGAAGCTGTGAGAACTAGGCCTAGTGAAGAAACTCAGAAAGCATTGCAGATTCTACTAGACTTTGTCTCAAAAAAGTTCTCTCTTTTGCTACATCCAGGACGTTCCGGATTGATGAAAGATATTATCAAGTACCTACTCAGTTTAACACCAAATGAAGGATTGTCTCTGAAATCAAAATCAATAATACTGCAGCTTTCACATGGATTTTCTCAGTGGAGCTTGGATTACAACAATGCAAACATTAAACTTGAGTCAGCGACTACAAATCTAACAAAAGCTGAGAAAGTGAAAGGTTATCTTGAGGATAATGTGAAAGATTTCCGAGAAATGGACATGGTGGAGAAGTGTTTGTCGAATCAGTTGGTCTGCTTGCAAGAAGAGAAGAGAGAACTCGAAGAGAAATTGAATGCCATAAAAGCTGAGATTTATGATTTTTCAGCACAGCGAGACACGGTTGCTAAGAGAAAGACAGAATTGTTTCAGAAAGGAAGTGTGATGAAAGCTGAAAGGGATGATTTGAGGAACCAAGTGCCAAGGTTGAAAGCTGAGAAGGAATTGGCAAATATAACACAAGCAAATATTGAAGAAGAGTGGTCAAAACTTGGAGAACAATTCATTGGAAGCATCAATTTTGAAGAGTTGACCTCGGAACCTTCACATAAATAA 4347 0.3639 MKNSSSTSFNHGWTYDVFVSFYGDDTRYGFTGNLYNTLRRKGINTFKDDIKLKKGEEISEDLLQAIDESRIAIIVFSENYASSTWCLDELVKIMECKKEKGQLVRLVFYYVDPSNVRHQRESFGRSMAKHEENIKISKEKVCKWRSALSSAANLSGWHFKNGYEYELIQKITEEVSNKLNVTPLHIADNPVGLNYKMSQVLSLLEIKSNDDDVCMVGICGIGGIGKTTLARAVYNSISRKFDSSSFLVDVRENSMKHGLVHLQETLLLHLLDENIKLDDVSKGIPILKRRLRNKKVLFILDDVDNLQQLRSLVGRNDWFGFGSRIIITTRDKHLLTTHGVEKEKLYEVKELNDRESLELFSMNAFRKSVPDPSYVEIAKSVMQYAKGHPLALNVIGSDLFGKTVEEWKSALNKYETIPSKEILNVLKVSYDNLDDNEKEIFLDIACFFKGYPKADVEKTLDESRFYSKYGIGVLVDKSLVTIGESNSVKMHDLVQDLGKNIARNESPFDPSKRRRLWHHEDVFEVLTESTGSDTIEGIVLDMPSLKQEVQLKANTFDNMRRLRILIVRNGQVSGAPQYLPNNLRLLEWNKYPLTSLPDNFHPKTLVVLNLPKSRIKMDEPFKKFEHLTFMNFSDCDSLTKLPDVSATPNLTRILVNNCQNLVDIHESVGDLDKLVTLSTEECPKLKSFPRGLRSKYLEYLNLRKCSNIQSFPDVLAKVENMKNIDIGGTAIKKFPSSIENFKGLEELVLTSCTNVEDLPSNTDMFQSIEELNVEGCPQLPKLLWKSLEDRTNDWLPKLSNLSLKNCNLSDEDLELILKCFLQLKWLILSDNNFLTIPDCIEDLSHLLLLNIENCKHLRDISVLPPYLQYIDARKCMALTPQSSDVLLSQAFLEVEYIDIVVPRKKIPSWFDHCNKGECVAFWIRKSFPTIALFFLLCGDDDERKTNYTCEFCVLINGIQVFQGRSEWPVDHIWLFDLRTHLTGSEWQGFNEKIKSSWNHVEISCSVIDESKNLTIKCCGIHLYKDRMNIHHVSFISPDLQSSNMARDNDGFDIYDEVSDDVVFPSIFSKYFNKTILEAMSDLQSSKRKVDNEYDFDEELEIDSDTDIDCQYMEEEHNSSSLNHQILEMFEPVLNDNEKDANSSKISLDPSTETEEEPLVTSIWNQVPLHQTSTDKGTQLVEQIEVDSTKRKQLILNAESTINKDNMEEFYASLEAEITSSLQVLPDNEAVRTRPSEETQKALQILLDFVSKKFSLLLHPGRSGLMKDIIKYLLSLTPNEGLSLKSKSIILQLSHGFSQWSLDYNNANIKLESATTNLTKAEKVKGYLEDNVKDFREMDMVEKCLSNQLVCLQEEKRELEEKLNAIKAEIYDFSAQRDTVAKRKTELFQKGSVMKAERDDLRNQVPRLKAEKELANITQANIEEEWSKLGEQFIGSINFEELTSEPSHK 1448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03738 1448 Gene3D - 9 183 IPR035897 -
Vifa1g03738 1448 SUPERFAMILY Toll/Interleukin receptor TIR domain 5 157 IPR035897 -
Vifa1g03738 1448 Coils Coil 1397 1417 - -
Vifa1g03738 1448 Gene3D Ribonuclease Inhibitor 544 695 IPR032675 -
Vifa1g03738 1448 Gene3D Ribonuclease Inhibitor 696 915 IPR032675 -
Vifa1g03738 1448 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 15 796 IPR044974 GO:0006952
Vifa1g03738 1448 SMART till_3 14 154 IPR000157 GO:0007165
Vifa1g03738 1448 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 175 444 IPR027417 -
Vifa1g03738 1448 PRINTS Disease resistance protein signature 841 857 - -
Vifa1g03738 1448 PRINTS Disease resistance protein signature 215 230 - -
Vifa1g03738 1448 PRINTS Disease resistance protein signature 290 304 - -
Vifa1g03738 1448 PRINTS Disease resistance protein signature 385 399 - -
Vifa1g03738 1448 FunFam Disease resistance protein (TIR-NBS-LRR class) 11 181 - -
Vifa1g03738 1448 SUPERFAMILY "Winged helix" DNA-binding domain 420 526 IPR036390 -
Vifa1g03738 1448 Pfam NB-ARC domain 196 429 IPR002182 GO:0043531
Vifa1g03738 1448 Coils Coil 1341 1375 - -
Vifa1g03738 1448 ProSiteProfiles TIR domain profile. 13 179 IPR000157 GO:0007165
Vifa1g03738 1448 SUPERFAMILY L domain-like 556 887 - -
Vifa1g03738 1448 Gene3D - 350 434 IPR042197 -
Vifa1g03738 1448 Pfam TIR domain 15 183 IPR000157 GO:0007165
Vifa1g03738 1448 Coils Coil 1303 1323 - -
Vifa1g03738 1448 Gene3D - 184 346 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03738 Vifa-Chr1 579066532 579072588 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03738 1 782 WRKY Transcription Factor Family AT4G12020 31.880 1.84e-95 338
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03738 - - pcin:129293148 1637.85