Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03736 ATGGCTTCAACCTCATCTTCTTTCGATCAAGGATATGTTTACCATGGGAATCAACACTTCATAGATGATGAAGGGTTAAGGATTGGAGAAGAGATTTCACAATCTCTTCTTAATGCAATACAAGATTCAAGGATTTCAATCATCATATTCTCTAACAACTATGCTAACTCAACTTGGTGTCCTGATGAACTTGTCAAGATTCTTGACTGTAAGAAACAGAAAGGACAAGTTGTTTGCTCAGTTTTTTATAATATCAGTCCATCAGATGTTAGGCATCAGAGAGGAAGTTATGAAGAAGCTTTTGATATGCTTGAAGAAAAATTTCAAGATAAGAAGGAAAAGGTGAAGAAATGGAGGTTGACTTTGACTCAAGCTGCAAACCTCTCTGGCTGGCATTTTAGTAATGGGTATATAATGCTTTTTTTTCAAAGCATAGTTGATGAGGTGTCAAGAAAGTTGAATCGAATCCTTCTAATCGTTGCTACACAGCCGGTTGGACTCCAATCTCGCGTACCAGATGTTAACTCACTCTTAGAACTTGAATGCAATGATGTTAAAATGATAGGAATTCATGGTATTGGTAAAACAACCATTGCTAAAGCCGTGTACAACAAAATATATGACCAATTTCAACATGCGAGTTTTCTAGCAAATGTAAGAGAAAATGCAAGTCATAAGGTTGGTTTAGTTAAACTCCAAGAGAGACTTCTTTTTGAGATACTTGGAGAGCAAGGAATGAAATTAGGCAGTGTTGATAAAGGAATCAATGTAATAAAAGATAAGTTATGCAGAATAAAAGTTTTGCTTGTTATTGATAATGTGGATGATGTGGAGCAATTACAAGCATTAGTCGGTGGATTTGATTGGTTTGGTCCAGGAAGTCGGATTATCATAACTACAAGAGATAAACATTTGTTAACCGCTCATGAAATTGGTTTAACTTATGAGGTGAAAAAGTTAAATCATATTGAATCTCTTACCCGAAAAGCAAGACCTAAAGAAGTTGAGAAATCTTAG 1017 0.353 MASTSSSFDQGYVYHGNQHFIDDEGLRIGEEISQSLLNAIQDSRISIIIFSNNYANSTWCPDELVKILDCKKQKGQVVCSVFYNISPSDVRHQRGSYEEAFDMLEEKFQDKKEKVKKWRLTLTQAANLSGWHFSNGYIMLFFQSIVDEVSRKLNRILLIVATQPVGLQSRVPDVNSLLELECNDVKMIGIHGIGKTTIAKAVYNKIYDQFQHASFLANVRENASHKVGLVKLQERLLFEILGEQGMKLGSVDKGINVIKDKLCRIKVLLVIDNVDDVEQLQALVGGFDWFGPGSRIIITTRDKHLLTAHEIGLTYEVKKLNHIESLTRKARPKEVEKS 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03736 338 PRINTS Disease resistance protein signature 184 199 - -
Vifa1g03736 338 PRINTS Disease resistance protein signature 261 275 - -
Vifa1g03736 338 ProSiteProfiles TIR domain profile. 1 153 IPR000157 GO:0007165
Vifa1g03736 338 SMART till_3 7 128 IPR000157 GO:0007165
Vifa1g03736 338 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 11 325 IPR044974 GO:0006952
Vifa1g03736 338 Gene3D - 151 311 IPR027417 -
Vifa1g03736 338 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 152 326 IPR027417 -
Vifa1g03736 338 Pfam TIR domain 18 151 IPR000157 GO:0007165
Vifa1g03736 338 SUPERFAMILY Toll/Interleukin receptor TIR domain 15 131 IPR035897 -
Vifa1g03736 338 Pfam NB-ARC domain 184 310 IPR002182 GO:0043531
Vifa1g03736 338 Gene3D - 5 150 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03736 Vifa-Chr1 579062240 579063330 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03736 25 326 WRKY Transcription Factor Family AT4G12020 28.431 5.25e-31 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03736 - - lja:Lj0g3v0340619.1 483.796