Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03728 ATGGCCAACATTTCTGATTCAAAGAATCTCATTTATGAAAACTTGAGCATGGAGAAGAGAGGAGAACAAGAAACACTAAAAAATGAAGAAGAAAGCTTCTCCTATGCAATGCAACTTGCAATCTCTATTGCACTTCCCATGGCACTTGAATGTGCAATTGAACTTGGTGTATTTGAAGTGTTGCAAAAAGCTGTGCTTAATTGTACCCTCATTCCTCATGATGATGATGATGATGATGAACAAAACCACATCAATTCCTTTCAAAGACACTATAGCATGACTTCGGTTGCCAAATTTTTTGCTCCTAATTCTGATGGTGTTTCATTAGCACCCTTGATTGCGTTGAATATCGATAACATTTGTCTTGCTAGTTGGTCTCAACTTAAAGACGCAGTTCAGTTCGGAGGCACTCCATTCAATAAGGCTCATGGCACCCATCTATTTGACTATCCTAACTCCGATTCGAGGTTCAATCAAATTTTCAATACTGCAATGAACAATCATTCAACTATAGTCATGAAGAGGGTTCTTGAATGCTACGATGGTTTTAAGGACATAAAAAGACTTGTGGATGTTGGTGGTGGCCTCGGGATGAACATTAACTTGATCACTTCAAAATACACTCATATACATGGTATCAATTTTGATTTGCCTCATGTCATACAACACGCTCCTTCCTATCCTGGAGTGGAGCACATTGGCGGAGATATGTTTCAAAGTGTGCCCAAAGGAGATGCCATTTTTATGAAGTGGATACTTCATGATTGGAGCGATGAACGTTGTTTGAAACTTATGAAGAATTGCTATGATGCTATTCCCGATGATGGAAAGGTGATAGTTTTGGAGGCACTTCTACCTATTATGCCAAAGAACGAAGTTGTTTGGAAATCTATCTCTCATGTGGATATTGCAATGATGACTCATTGTTTAGAAGGAAAAGAAAGAACCGAACATGAATTCAAAGATTTAGCAACTAAAGCTGGATTTCGTGGCATCAAATATGGATGTTGTATTTATAATTTCTGGGTTATGGAGTTTTTCAAGTAA 1047 0.3792 MANISDSKNLIYENLSMEKRGEQETLKNEEESFSYAMQLAISIALPMALECAIELGVFEVLQKAVLNCTLIPHDDDDDDEQNHINSFQRHYSMTSVAKFFAPNSDGVSLAPLIALNIDNICLASWSQLKDAVQFGGTPFNKAHGTHLFDYPNSDSRFNQIFNTAMNNHSTIVMKRVLECYDGFKDIKRLVDVGGGLGMNINLITSKYTHIHGINFDLPHVIQHAPSYPGVEHIGGDMFQSVPKGDAIFMKWILHDWSDERCLKLMKNCYDAIPDDGKVIVLEALLPIMPKNEVVWKSISHVDIAMMTHCLEGKERTEHEFKDLATKAGFRGIKYGCCIYNFWVMEFFK 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03728 348 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 1 348 IPR016461 GO:0008168
Vifa1g03728 348 Gene3D Vaccinia Virus protein VP39 158 337 IPR029063 -
Vifa1g03728 348 Coils Coil 12 32 - -
Vifa1g03728 348 Gene3D - 14 69 IPR036388 -
Vifa1g03728 348 PIRSF O-mtase 13 74 IPR016461 GO:0008168
Vifa1g03728 348 PIRSF O-mtase 65 348 IPR016461 GO:0008168
Vifa1g03728 348 SUPERFAMILY "Winged helix" DNA-binding domain 29 103 IPR036390 -
Vifa1g03728 348 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 105 346 IPR029063 -
Vifa1g03728 348 Pfam O-methyltransferase domain 125 330 IPR001077 GO:0008171
Vifa1g03728 348 PANTHER O-METHYLTRANSFERASE 36 333 IPR016461 GO:0008168
Vifa1g03728 348 FunFam Caffeic acid O-methyltransferase 101 348 - -
Vifa1g03728 348 Gene3D - 81 176 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03728 Vifa-Chr1 577709333 577710943 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03728 28 348 Monolignol Biosynthesis Gene Families AT5G54160 45.821 5.91e-112 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03728 K13066 - gmx:100803633 438.343