Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03723 ATGCAATCAGATAGTGGCAAGTTATTTATCGGTGGAATATCGTGGGACACCAACGAAGAGCGACTCAGGGAGTATTTTAGTACTTATGGGGAGGTTAAGGAAGCTGTGATCATGAAGGATCGGACAACTGGGAGAGCACGTGGATTTGGTTTTGTTGTTTTCATTGATCCGGCTGTTGCTGAGATTGTTATCCAAGAGAAGCACAACATCGATGGAAGGATGGTTGAGGCGAAGAAAGCTGTTCCTAGAGACGACCAAAACGTATTGAGTAGAACCAGTGGCAGCATCCACGGTTCTCCTGGTCAAGGTCGCACGAGAAAGATATTTGTCGGGGGTTTAGCTTCTACAGTGACAGAGAGTGATTTCAAGAAGTACTTTGATCAGTTTGGGACTATAACAGATGTTGTGGTAATGTATGATCACAACACTCAGAGGCCGAGAGGATTTGGATTTATCACATATGATTCTGAAGAAGCTGTTGACCAGGTCTTACTTAAGACGTTTCATGAATTGAACGGTAAAATGGTTGAGGTCAAGCGAGCAGTTCCTAAGGAGTTATCGCCAGGACCTACCCGCTCACCTCTCAGTGGATACAATTATGGTCTGAGTAGGGTCAATAGTTTCTTGAATGGCTTCAATCAGGGGTATAGTCCAAGTGCCGTAGGAGGCTATGGACTTCAGATGGACGGTAGGTTCAGTCCGGTTGCTAGTGCTAGAAATGCATTTGCACCATTTGGATCTGGTTATGGAATGGGTATGAATTTTGAGCCGGGTTTGAGTCCTGGATTTAGAGGGAATGCAAATTTCAATGGCAATCTTAGCTATGGACGGGGCTTGAATCCGTACTTTATCGGAAGCTCCAATAGGTTTGGCAATCCTGTTGGATATGAAAGTGGTAACGGGGGAAACAATTCTTTCTTCAGTTCCGTGACTCGAAATTTGTGGGGGAATGGAAGCCTTAACTATGGGACAAATTCTGCAAATTCCAATGCATACATTGGATCGGGAAGTGGAAATGTTGGAGGAAATGCATTTGGCAATACTGGACTCAACTGGAGTTCTTCGCCAATATCTGGACACGGGGGAGGGAACAATGTGTCACCGGGTAGTGGAAACCTCGGATACGGAGGTGGTAACAATGGTTATGGATTGGGGACTGAAGGGTACGGAAGAAGCAGCGGTTCCTCTCTTGCACCAACATCTTCATACTCTACATCAAATGGTGGAGGTGGTGTTGATGGTTCTTTTGGTGATTTTTACAGCAATAGTTCGGTCTATGGGGACTCCACTTGGCGATCTGCAAATTCTGAGCGAGATGGATCTGGTCCCTTCGGTTACGGACTCGGTGGTGCAGCTTCAGATGTTTCTGTCAAGACTTCTCCTGGTTATGTTGGTGGTTATACTGTTAATAAAAGGCAGCCAAATAGGGGAATTACTACATAG 1443 0.4539 MQSDSGKLFIGGISWDTNEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVFIDPAVAEIVIQEKHNIDGRMVEAKKAVPRDDQNVLSRTSGSIHGSPGQGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDQVLLKTFHELNGKMVEVKRAVPKELSPGPTRSPLSGYNYGLSRVNSFLNGFNQGYSPSAVGGYGLQMDGRFSPVASARNAFAPFGSGYGMGMNFEPGLSPGFRGNANFNGNLSYGRGLNPYFIGSSNRFGNPVGYESGNGGNNSFFSSVTRNLWGNGSLNYGTNSANSNAYIGSGSGNVGGNAFGNTGLNWSSSPISGHGGGNNVSPGSGNLGYGGGNNGYGLGTEGYGRSSGSSLAPTSSYSTSNGGGGVDGSFGDFYSNSSVYGDSTWRSANSERDGSGPFGYGLGGAASDVSVKTSPGYVGGYTVNKRQPNRGITT 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03723 480 FunFam Heterogeneous nuclear ribonucleoprotein 1 103 190 - -
Vifa1g03723 480 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Vifa1g03723 480 MobiDBLite consensus disorder prediction 459 480 - -
Vifa1g03723 480 SUPERFAMILY RNA-binding domain, RBD 3 104 IPR035979 GO:0003676
Vifa1g03723 480 SMART rrm1_1 7 78 IPR000504 GO:0003723
Vifa1g03723 480 SMART rrm1_1 107 179 IPR000504 GO:0003723
Vifa1g03723 480 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Vifa1g03723 480 CDD RRM2_Hrp1p 107 184 - -
Vifa1g03723 480 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Vifa1g03723 480 Gene3D - 103 189 IPR012677 -
Vifa1g03723 480 Gene3D - 4 88 IPR012677 -
Vifa1g03723 480 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 476 - -
Vifa1g03723 480 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
Vifa1g03723 480 SUPERFAMILY RNA-binding domain, RBD 105 193 IPR035979 GO:0003676
Vifa1g03723 480 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 69 IPR000504 GO:0003723
Vifa1g03723 480 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 165 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03723 Vifa-Chr1 576741235 576745357 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03723 8 268 Eukaryotic Initiation Factors Gene Family AT1G71770 28.758 1.90e-16 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03723 K14411 - gmx:100795907 797.734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g03723 1 576741235 576745357 Vifa1g03723 1 576741235 576745357 ECH