Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03721 ATGCCTGCTGAGAATTGGGACGGTGAAGGCGAAGCATTCGTCGAAACCGATCCAACCGGAAGATTCGGTCGTTACAGTGATTTACTCGGCTATGGTGCTGTGAAGAGAGTTTATAGAGGTTTTGATCAAGAAGAAGGGATTGAAGTTGCATGGAATCAAGTTCGTCTTCGGAACTTCAGCAACGATCCGGTTCTAATCAATCGGCTTCATTCCGAAGTTGAATTGCTCAGGAATTTAAGCAACAAGTTCATCATTGTTTGTTATAGTGTTTGGAAAGACGATGATCGCGGTAATATCAATTTTATTACCGAGGTTTGTACGTCGGGGAATCTTAGGGATTACCGGAAGAAACATCGGCATGTTTCGATTAAGGCGTTTAAGAAATGGTCGAAACAGGTTCTTGAGGGGTTGGAGTATCTTCATACGCATGATCCTTGCATTATTCATAGGGATCTTAATTGCAGTAACATCTTTGTTAATGGAAACATTGGTCAGGTGAAAATTGGTGATCTGGGATTGGCTGCCATAGTGGGAAGAAGCCATGCAGCACATTCAATTTTAGGGACTCCTGAGTATATGGCACCCGAACTGTACGAGGAAGATTACACTGAGATGGTGGACATATATTCTTTTGGAATGTGTTTGCTTGAAATGGTTACAATGGAGATACCATACAGTGAATGTAACAGTGTAGCCAAGATATACAAAAAGGTCACAATGGGAATCAAGCCTCAAGCCTTGAGCAATGTCAGAGATCCAGATGTGAAAGCGTTCATCGAGAAATGCATAGCACAACCAAGAGCAAGACCTTCAGCCACTGATCTTCTTCAGGACCCTTTCTTTTTTGAACTCAACAATGGTGAAGAATCATCAACATCTATCACTTCTTAA 891 0.4186 MPAENWDGEGEAFVETDPTGRFGRYSDLLGYGAVKRVYRGFDQEEGIEVAWNQVRLRNFSNDPVLINRLHSEVELLRNLSNKFIIVCYSVWKDDDRGNINFITEVCTSGNLRDYRKKHRHVSIKAFKKWSKQVLEGLEYLHTHDPCIIHRDLNCSNIFVNGNIGQVKIGDLGLAAIVGRSHAAHSILGTPEYMAPELYEEDYTEMVDIYSFGMCLLEMVTMEIPYSECNSVAKIYKKVTMGIKPQALSNVRDPDVKAFIEKCIAQPRARPSATDLLQDPFFFELNNGEESSTSITS 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03721 296 Gene3D Transferase(Phosphotransferase) domain 1 106 286 - -
Vifa1g03721 296 SUPERFAMILY Protein kinase-like (PK-like) 17 281 IPR011009 -
Vifa1g03721 296 FunFam Probable serine/threonine-protein kinase WNK1 8 104 - -
Vifa1g03721 296 FunFam probable serine/threonine-protein kinase WNK9 106 286 - -
Vifa1g03721 296 CDD STKc_WNK 21 281 - -
Vifa1g03721 296 ProSiteProfiles Protein kinase domain profile. 23 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g03721 296 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 8 285 - -
Vifa1g03721 296 Pfam Protein kinase domain 27 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g03721 296 Gene3D Phosphorylase Kinase; domain 1 8 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03721 Vifa-Chr1 576078232 576080378 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03721 7 281 MAP Kinase Kinase Kinase AT5G55560 76.000 1.11e-166 463
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Vifa1g03721 Pkinase 5.6e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03721 K08867 - gmx:100798280 541.576