Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03716 ATGGTTTCTTCGCAAGGAAATGCTGATCAAAATGGTTCGTCTGATAAAGAACAGAAGCAAGTGAGTCCTCAGACGGAGGTTGCACTGTCACAAGGGGTTGACGACGTAGCTAACAATGAATCATCGGATTCCGATGTCAATGCCATGCCGAATGAATTGCCTCCATCGCCGGACGCTTCACCGCTCAAGACACATTCCCAGAGCCCCGGTACACCTTCTAATGGATTGCCTCTGTCGCAATCTAGTCAGCGCACTTCCGCTATAATTCGTGAAAAGGTGACATCAGATGGCTTTAACTGGCGAAAGTATGGCCAGAAGAGCCTCAAGGCAGAAGGATTTAGAAGATGCTATTACAAATGTTCGCATTCAAACTGCATGGCGAAAAAGAAATTTGTGATGTCACCCGATGGAAACTTCGAAAATTACACTTACGCCGGTCAGCATAATCATCCTAAACCTCAATTGAACACCGTACCATCGGTTGAATGTGTTCTTCCCGTTGTTGAACAAGGACCGCAACAATCCTCTTTGGCTGACATGGAAGGTCAAGACAAGTCATCGGTTGAGTATGAATCTACGCCTCAACAGATCAGTCCTTTACGTTGCTGCCCACCTTCAAATGCTTCTGAAACTCATGACTCAAAGCGACTGAAGAAAGACGATAACAACACTCATACCGTTGGAGTTGACGTGTCAACTGGTGAATCTCGCTTGGTTGTTCAAACTCCAAGTGCATCCGGAATCGTAGAAGATGGGTATCGCTGGCGCAAATATGGGCAAAAAAACGTTAAAGGGAATGAAAATCCAAGAAACTATTATCGATGCACGTCTCCTGGATGCCATGTCAAAAAGCATGTTGAAAAATCCCCTGAGAATCCAATAAATATCGTAACTACCTATGAGGGAGAACATGATCACGAACCCCCTACTGCAAGACGCGTGCATTCCTTGTAA 954 0.4528 MVSSQGNADQNGSSDKEQKQVSPQTEVALSQGVDDVANNESSDSDVNAMPNELPPSPDASPLKTHSQSPGTPSNGLPLSQSSQRTSAIIREKVTSDGFNWRKYGQKSLKAEGFRRCYYKCSHSNCMAKKKFVMSPDGNFENYTYAGQHNHPKPQLNTVPSVECVLPVVEQGPQQSSLADMEGQDKSSVEYESTPQQISPLRCCPPSNASETHDSKRLKKDDNNTHTVGVDVSTGESRLVVQTPSASGIVEDGYRWRKYGQKNVKGNENPRNYYRCTSPGCHVKKHVEKSPENPINIVTTYEGEHDHEPPTARRVHSL 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03716 317 ProSiteProfiles WRKY domain profile. 89 153 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa1g03716 317 MobiDBLite consensus disorder prediction 60 83 - -
Vifa1g03716 317 MobiDBLite consensus disorder prediction 1 49 - -
Vifa1g03716 317 ProSiteProfiles WRKY domain profile. 244 309 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa1g03716 317 MobiDBLite consensus disorder prediction 172 210 - -
Vifa1g03716 317 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 30 312 IPR044810 GO:0003700
Vifa1g03716 317 FunFam WRKY transcription factor 236 310 - -
Vifa1g03716 317 MobiDBLite consensus disorder prediction 1 83 - -
Vifa1g03716 317 Pfam WRKY DNA -binding domain 250 307 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa1g03716 317 Pfam WRKY DNA -binding domain 96 151 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa1g03716 317 SUPERFAMILY WRKY DNA-binding domain 90 153 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa1g03716 317 SMART WRKY_cls 249 308 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa1g03716 317 SMART WRKY_cls 94 152 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa1g03716 317 Gene3D WRKY domain 234 310 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa1g03716 317 Gene3D WRKY domain 80 154 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa1g03716 317 MobiDBLite consensus disorder prediction 172 225 - -
Vifa1g03716 317 MobiDBLite consensus disorder prediction 211 225 - -
Vifa1g03716 317 SUPERFAMILY WRKY DNA-binding domain 243 309 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03716 Vifa-Chr1 575445053 575446279 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03716 59 314 WRKY Transcription Factor Family AT2G04880 39.716 1.66e-58 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vifa1g03716 WRKY 1.2e-24 CL0274