Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03715 ATGCAGGCATCGGAGCGGCATAGGAGTATGAGTATGTACTATCAACCATTGCAACAAATCGAATCATATTGCTTGCCGCAATATCGAAATCTAAATCATCAGCTATACAGCAATGATGGAGGCAGTGGAACTCAATTCTCGGCTCCAAATTCTTCTGACTTTTACTGCACGTTGGAGTCGTCTTCTGCAGCTGGAAGTTTTGTGGTTTACAACTCTCCTTCGACCGTTAGTTTCTCGACTAACGATAGTCCAATGTCGCAGCAAGATTGTCAGACATATCCACAAGATCCTTATCACTCCCCCGATGATACCTATGACTCACCGATGAGTGGATCGTGCGTAACTGAAGATTTAAGTAGCTTCAAACACAAGCTAAGAGAATTGGAAAATGTAATGCTTGGTCCTGACTCTGATAATCTTGATAGTTACGACAGCGCCATCAGCAAGGGAACTGGTTTTGTTTCACTTGAAATGGACAGTTGGAGACAAACAATGGTAGCAATTTCGAGTAAAAATCTAAAGCACATCCTTACTGCATGTGCAAAAGCAATTGCAGACAATGATTTGCTTATGGCACAATGGTTGATGGATGAATTACGGCAGATGGTTTCGGTTTCTGGCGAACCGATTCAAAGGTTGGGAGCATACATGTTGGAAGGACTCATTGCGCGATTGTCTGCATCTGGGAGTTCAATCTACAAATCTCTAAGATGCAAAGAACCGGAAAGTACCGAACTTCTCTCTTACATGAACATACTTTATGAGGTTTGCCCTTACTTTAAATTTGGATACATGTCTGCCAATGGAGCCATTGCAGAAGCCATGAAAAATGAAGCAAGGGTTCATATAATCGATTTCCAAATTGCTCAAGGAAGCCAATGGATTTCGTTGATTCAAGCTTTTGCAGCTAGGCCCGGCGGGCCTCCGCACATCCGCATTACAGGTATTGATGATTCAACATCAGCTTATGCACGTGGAGGTGGACTACATATAGTTGAAAAGAGATTATCAAAGCTTGCTCAGCATTTCAAGGTGCCATTTCAATTTCACGCAGCAGCTATCTCAGGTTGTGATGTTCAACTGCATAACCTCGGAGTTCGGCCGGGAGAAGCTCTTGCAGTAAATTTTGCATTCATGCTACATCACATGCCGGACGAGAGTGTCAGCACTCAGAATCATAGAGATAGGCTCTTAAGATTGGTTAAGAGCCTATCACCGAAAGTCGTGACGCTTGTTGAGCAAGAATCTAACACAAACACTGCTGCATTCTTTCCGCGTTTTCTCGAAACTATGGACTATTACACAGCAATGTTCGAGTCAATAGACGTGACTCTTCCGAGAGAACATAAAGAGAGAATCAATGTTGAGCAGCATTGCTTGGCAAGAGACTTAGTTAACATCATAGCTTGTGAAGGGGTCGAGAGAGTGGAACGACACGAGTTGCTTGGGAAGTGGAGGTCGAGATTCGCAATGGCTGGTTTCACTCCTTACCCTTTGAGTTCTTTGGTGAATGGTACCATAAAGAAATTGCTTGAGAACTATAGTGATAGATATAGACTTGAAGAGAGAGATGGAGCTTTATACCTTGGTTGGATGAATAGAGATTTGGTTGCTTCTTGTGCTTGGAAATGA 1632 0.4301 MQASERHRSMSMYYQPLQQIESYCLPQYRNLNHQLYSNDGGSGTQFSAPNSSDFYCTLESSSAAGSFVVYNSPSTVSFSTNDSPMSQQDCQTYPQDPYHSPDDTYDSPMSGSCVTEDLSSFKHKLRELENVMLGPDSDNLDSYDSAISKGTGFVSLEMDSWRQTMVAISSKNLKHILTACAKAIADNDLLMAQWLMDELRQMVSVSGEPIQRLGAYMLEGLIARLSASGSSIYKSLRCKEPESTELLSYMNILYEVCPYFKFGYMSANGAIAEAMKNEARVHIIDFQIAQGSQWISLIQAFAARPGGPPHIRITGIDDSTSAYARGGGLHIVEKRLSKLAQHFKVPFQFHAAAISGCDVQLHNLGVRPGEALAVNFAFMLHHMPDESVSTQNHRDRLLRLVKSLSPKVVTLVEQESNTNTAAFFPRFLETMDYYTAMFESIDVTLPREHKERINVEQHCLARDLVNIIACEGVERVERHELLGKWRSRFAMAGFTPYPLSSLVNGTIKKLLENYSDRYRLEERDGALYLGWMNRDLVASCAWK 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03715 543 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 139 537 IPR005202 -
Vifa1g03715 543 Pfam GRAS domain family 173 543 IPR005202 -
Vifa1g03715 543 ProSiteProfiles GRAS family profile. 164 543 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03715 Vifa-Chr1 575404012 575405643 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03715 12 543 GRAS Transcription Factor Family AT5G48150 66.357 0.0 704
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vifa1g03715 GRAS 6.2e-137 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03715 - - gmx:100808300 984.556