Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03705 ATGGAAACCGAGAACGAGGCATTAGTTCAGATTGTATTCCAGAAAACTTGGATCCGGCTCCCATTCAAGATGAATATGCGCCCAGTCATATTTGCTCAAGAAACTGTTTCTCATATTGTATCTATTGACATGATGTCAGGGAAGGAAGATCGTGAGAATATTTTGCGAGCAAGGGCGTCCGGAAAGGGTGTTCTGACATCCCCTTTTAAACTACTAAAGTCCAATCACTTAGGTGTTGTACTTACATTTGCTGTCTATGGCTCTAAGCTTCCTCCAGATGCTACACCCGAACAGCGTATCGAAGCTACTGTCGGCAAGCAAACTATTGTTGTTAATGTTTATGACACAACTAATGCATCTGCACATATTACAATGTATGGTACCGATGTTGTTGATACTGGCTTACTACACGTAAGCGGTCTAGATTTTGGGGACCCGCTACGAAAACATGAGATGCACTGCAGGTTCACGCATATGCCTCCATTTCCTTGGACTGCAGTCAATGCATCTGTGGGGGTATTTGTTATTACCTTGCTTCTTGGACATATATTTCATGTGGCAATAAATCGAATAGCTCAAGTAGAGGATGACTATCGTCGAATGAAAGAGCTCATGGTTCGCGCTGAGGCTGCAGATGTAGCAAAATCTCAGTTTCTTGCGACAGTTTCGCATGAGATCAGGACTCCAATGAATGGTGTTTTAGGTATGCTGCAAATGTTGATGGATACCGATCTTGATGACAATCAGATCGATTGTGCCCAAACTGCTCATGATAGTGGTAAAGATCTTATATCGGTCATAAGTGAGGTTCTCGAACAAGCTAAGATCGAGGCAGGAAGGCTTGAACTCGAATCTGTAGCTTTTCATCCACATGCTATTCTCGATGAAGTTCTATCACATTTCTCTGAAAAATCCATTGAAAAACGAATTGAGTTGGCTGTTTATGCGTCCAACCAAGTACCTCAAGTTGTCATTGGCGATCCTAAACGCTTCCGGCAAATAATTACCAATCTTGTCGGAAACTCACTTAAGTTCACTCATGATAAAGGACATGTTTTTGTGTCGATTCATCTTTCAAATGAAGTAAAGAATCCACTTCATATCATGGATCCAGTGCTGAGAGAAGGCTTAAACACGAGTCACGACATATCGGAAAGAACATGTAACACGTTGAGTGGATTTCCTGTAGGCAACAGATGGAAAAGCTGGGAAAATTTTAAAAAATTAAATTTATCGGATGAGTCTGAAACTATTCAACTACTAGTAACGGTTGAGGACACTGGTATAGGAATTCCTACCGATGCACAAAGCCGCATATTTACACCTTTTATGCAGGCGGATAGTTCTACATCTCGAACATACGGTGGAACTGGAATAGGATTGAGCATTAGTAAATGTCTAGTTGACCTCATGGGAGGAGAAATTGGATTTGTAAGTGAGCCTGAAATCGGAAGTACTTTTTCGTTTACTGGAAATTTCAGGAAAGGACAAACCGAATCTCGGGATGATAAGTTGCAGAAGAACTATCCCGAGTTCCAAGGATTGAATGCATTAGTAGTAGATAGAAGAAAAATCCGAGCCGAGGTTACACGATATCACCTGCAGAGGTTGGGGATGTCTGTGGATGTAAGTTTCAGTCTTCAATCTGCATGCTTTTGTTTATCCGAAACTTGCAACTCAAGTATGTCAGGACAGTTAGCCATGATTCTCATAGAGAAGGATTCCTGGGACAAGGAAAGTAGTAGCTTATTCGAAATCAAGAAACATGTACATAATGGCATCAAAGAGGACCCGTTAAAATTTTCAAAGATTTTTCTCCTGTCCGCCCATCTAAGCTTCGGCGAGCGCAACGAGCTGAAGTCTGTCGGTATCATAGATGATATACTAAAGAAGCCGCTTTGGCTAAATGCTTTGATTCGATACTACAGGTCATCGCCCGGAACTGGGAAAAAAGAAATTACTAGAAAGAAAGTATCCAAACTTGGAAATTTGTTAATGCACAAACGAATTTTGGTGGTTGATGATAATGCGGTGAACCGAAAAGTTGCAGAAGGTGTACTACGAAAATACGGAGCAGTAGTTACCTGTGTTGAGGGCGGTAAGGTTGCTTTAAAGATGCTTAAACCACCACATAGTTTCGATGCTTGTTTCATGGATCTCCAAATGCCAGAAATGGACGGTTTTGAGGCGACAAGGCAAATCCGGTATATGGAGAACGAGGTAAATGAAAAAATCGCTTCGGGGGAAGCATTGGCAGAGACGTTTGGCAACAATTCTTATTGGCACACTCCAATATTAGCTATGACAGCTCATGTAACTCCGGCATCAAATGAAGAATGCAAAAAATGTGGGATGGACGACTACGTGTCGAAGCCATTCGAAGAAGAGCAGCTCTATATGGCAGTTGCACGTGTCTTCAATTTCGAGTCATGA 2433 0.4176 METENEALVQIVFQKTWIRLPFKMNMRPVIFAQETVSHIVSIDMMSGKEDRENILRARASGKGVLTSPFKLLKSNHLGVVLTFAVYGSKLPPDATPEQRIEATVGKQTIVVNVYDTTNASAHITMYGTDVVDTGLLHVSGLDFGDPLRKHEMHCRFTHMPPFPWTAVNASVGVFVITLLLGHIFHVAINRIAQVEDDYRRMKELMVRAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTDLDDNQIDCAQTAHDSGKDLISVISEVLEQAKIEAGRLELESVAFHPHAILDEVLSHFSEKSIEKRIELAVYASNQVPQVVIGDPKRFRQIITNLVGNSLKFTHDKGHVFVSIHLSNEVKNPLHIMDPVLREGLNTSHDISERTCNTLSGFPVGNRWKSWENFKKLNLSDESETIQLLVTVEDTGIGIPTDAQSRIFTPFMQADSSTSRTYGGTGIGLSISKCLVDLMGGEIGFVSEPEIGSTFSFTGNFRKGQTESRDDKLQKNYPEFQGLNALVVDRRKIRAEVTRYHLQRLGMSVDVSFSLQSACFCLSETCNSSMSGQLAMILIEKDSWDKESSSLFEIKKHVHNGIKEDPLKFSKIFLLSAHLSFGERNELKSVGIIDDILKKPLWLNALIRYYRSSPGTGKKEITRKKVSKLGNLLMHKRILVVDDNAVNRKVAEGVLRKYGAVVTCVEGGKVALKMLKPPHSFDACFMDLQMPEMDGFEATRQIRYMENEVNEKIASGEALAETFGNNSYWHTPILAMTAHVTPASNEECKKCGMDDYVSKPFEEEQLYMAVARVFNFES 810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03705 810 Gene3D - 278 496 IPR036890 -
Vifa1g03705 810 CDD HATPase_EvgS-ArcB-TorS-like 331 490 - -
Vifa1g03705 810 PANTHER TWO-COMPONENT HISTIDINE KINASE 29 799 - -
Vifa1g03705 810 Pfam Response regulator receiver domain 670 742 IPR001789 GO:0000160
Vifa1g03705 810 Gene3D CHASE domain 25 159 IPR042240 -
Vifa1g03705 810 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 200 280 IPR036097 GO:0000155|GO:0007165
Vifa1g03705 810 Coils Coil 191 211 - -
Vifa1g03705 810 Pfam His Kinase A (phospho-acceptor) domain 214 279 IPR003661 GO:0000155|GO:0007165
Vifa1g03705 810 CDD HisKA 214 275 IPR003661 GO:0000155|GO:0007165
Vifa1g03705 810 Pfam CHASE domain 27 120 IPR006189 -
Vifa1g03705 810 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 269 490 IPR036890 -
Vifa1g03705 810 Gene3D - 666 809 - -
Vifa1g03705 810 SMART HisKA_10 214 279 IPR003661 GO:0000155|GO:0007165
Vifa1g03705 810 CDD REC_hyHK_CKI1_RcsC-like 670 802 - -
Vifa1g03705 810 SUPERFAMILY CheY-like 511 642 IPR011006 -
Vifa1g03705 810 SUPERFAMILY CheY-like 667 807 IPR011006 -
Vifa1g03705 810 SMART HKATPase_4 326 495 IPR003594 -
Vifa1g03705 810 Gene3D - 184 277 - -
Vifa1g03705 810 PRINTS Bacterial sensor protein C-terminal signature 438 448 IPR004358 GO:0016310|GO:0016772
Vifa1g03705 810 PRINTS Bacterial sensor protein C-terminal signature 420 434 IPR004358 GO:0016310|GO:0016772
Vifa1g03705 810 PRINTS Bacterial sensor protein C-terminal signature 455 473 IPR004358 GO:0016310|GO:0016772
Vifa1g03705 810 ProSiteProfiles Histidine kinase domain profile. 221 495 IPR005467 -
Vifa1g03705 810 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 326 490 IPR003594 -
Vifa1g03705 810 ProSiteProfiles Response regulatory domain profile. 669 806 IPR001789 GO:0000160
Vifa1g03705 810 ProSiteProfiles CHASE domain profile. 28 113 IPR006189 -
Vifa1g03705 810 SMART REC_2 668 802 IPR001789 GO:0000160
Vifa1g03705 810 FunFam Histidine kinase 4 186 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03705 Vifa-Chr1 573794083 573797124 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03705 1 806 Miscellaneous Gene Families AT5G35750 62.019 0.0 1004
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vifa1g03705 HATPase_c 9.1e-32 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03705 K14489 - gmx:100805107 1236.48