LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa1g03683	ATGGCCACCTCTGCTATCCAACAATCAGCATTCACTGGTAAGACTGATTTGAGGCAGGGAAATGAATTCATCAGGAAAGTTGGTAACCTTGGCCAAAGTCGCTTCACCATGCGTCGTACCGTGAAGAGTGCTCCTGAAAGCATTTGGTATGGTCCTGACCGTCCCAAGTACTTGGGTCCATTCTCTGAACAAATTCCATCATACCTTACTGGTGAGTTTCCTGGTGATTATGGATGGGACACAGCTGGATTATCAGCTGACCCTGAAACATTTGCAAGGAACCGTGAGCTTGAAGTAATTCACAGCAGATGGGCTATGCTTGGTGCGTTGGGATGTACCTTCCCTGAACTCCTTGAAAAGAATGGTGTTAAATTCGGCGAGGCAGTGTGGTTCAAAGCCGGTTCCCAGATCTTTGCTGAGGGTGGCCTTGACTATTTGGGAAACCCAAACCTGATTCATGCTCAGAGCATTCTTGCAATCTGGGCTACTCAGGTTGTGCTCATGGGATTTGTTGAAGGGTACAGAATTGGTGGAGGACCCCTTGGTGAAGGACTAGACCCACTTTACCCTGGTGGTGCTTTTGACCCTCTTGGTCTTGCTGATGACCCTGATTCATTTGCTGAGTTGAAGGTCAAGGAACTCAAGAACGGTCGAACCTGTATGACCATGTTGCTGACCCTGTTGCAAAACAACGCATGGGCTTTCGCTACTAACTTTGTCCCCGGACAATAA	732	0.4809	MATSAIQQSAFTGKTDLRQGNEFIRKVGNLGQSRFTMRRTVKSAPESIWYGPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPELLEKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWATQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDSFAELKVKELKNGRTCMTMLLTLLQNNAWAFATNFVPGQ	243

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa1g03683	243	Pfam	Chlorophyll A-B binding protein	66	226	IPR022796	-
	Vifa1g03683	243	Gene3D	Chlorophyll a/b binding protein domain	56	237	-	-
	Vifa1g03683	243	PANTHER	CHLOROPHYLL A/B BINDING PROTEIN	5	224	IPR001344	GO:0009765\|GO:0016020
	Vifa1g03683	243	FunFam	Chlorophyll a-b binding protein, chloroplastic	56	148	-	-
	Vifa1g03683	243	SUPERFAMILY	Chlorophyll a-b binding protein	48	227	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa1g03683	Vifa-Chr1	569370768	569371912	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa1g03683	1	243	Chloroplast and Mitochondria Gene Families	AT2G05070	75.094	4.17e-147	409

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa1g03683	K08913		-	gmx:100815789	428.713