Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03680 ATGTCCCAAACAAACATTTCTTCCGATGGTGGCAATATAGAACTTGGTGCTAGCTTACTGACTAGTGGTAGCAAATACAACAAGATATGGCGAAAAAGTTTATACGTCGGAATCATGATCTCCTTGAAGAAGCCTACGACTTTTAGTAGCAACTATCAAGAGTCTGCATCATCACTGCCATACACTTCATTGCCTCATAGTCCACCTGCTAGAACCTCATCAACCAAATCTTTTGTTTCAATTGATGTAGTCTCTCATGTCCAAGAAGAAGAAGAAGGTGTTAGGACTGATATTGCTAGAATTGTGAAGGAGAAGGACTTGAAATCTCTTGTTGAACTTGGTGGAGTTGGTAGAGTTTATCATGTTCTTCATGGTCTAACTCAACACTCGTCAGAGGAGAACCTTGGAGCAACCTTCTCTGGGTTTCTTTGGAAAAGCTGCAAGCAAAATCTTTATACAATTTCAATGTTGTTGATTTCAGCCTTATTATCCTTTGCCACCGAGTTTAAACAGGAGGGGCCTAGATATGGTTGGCATGACGGTGTTGCTATGATTTTTGCTGTTTTGCTTCTGATTGCATTCTCTTCAATAACTGGCTTTTGGCGAGAAAGAAAAACAATCAAGTTGGCAAAGAAAAAAGGCGAGGCGATGAAATGTAATGTTAAAAGACATGAAGAGTTCCAAGTGGTTGATCTTACTCTTTCCATGTATGATATTGTGGTGGGTGACAAGGTGCGTTTGAAACCTCGTGATGAGGTTCCTGCTGATGGTTTGCTTTTGAGTGGTGACCATCTTGTGTTGGCCGAGGGAATGAAAAATGAAAAAATTGATTGTGAAGTGAACCCATTTCTTATAGCCGGTTCAAAGGTGGTTGAAGGTCATGGATGGATGCTTGTGACATCAGTTCGAAACAAATCAAACGCGAGTGAGATCAAGAGATGCCTTTTGGAAAATCTCATTGAGAAGCCAATTTCATACCTTGACAAAGCTTCTCTTTTTATCTTTACACTTGTTGCACTTGTATTGTTCATTCGTCTAATTTGTAAAAAGGACGGAGATGATGGCGGACTTCCAGATATTAAAGGGGATAATGTTTCAGTTAGCATGTTAACAGAACTCCTTGAAAATATTTTTTCAAGACCACAAGGAAGGATAGCAATTTTAGCACATATTTTTAGTGTTATAATACTATGTGTACAACATGGAGTCCCATTGATGATTACTTTATCTCTCCATTACCAAAATGATGAAGTAGTGATTGATCAAGAGGTTGTTCTTAATGATTTTTCAGCCTGTACAACAATGGGGTTGGTAAATGTCATCTGCATCGATGTATCTGGCGGTGCACTAATATTAAAGCCAATGGAGGTCGGTGAAATATGGATAGGGGAAGGGGAGACAGACATCAACAATATTCAGGAATCAGGAACATGTCAGGTTGTACTAGAGAAACTTAAACAAGGAGTTTGTTTATCAGTGCTTGCACCAGGACTATCTCATTCTCATGTCTTCAACTCACTTGTTTCTTGGGCAAACACAACATTGGAAATGGACATTATATCTTTCAGAGACAATTTTCATATTGTTAAGCATGGCAAACTGGATTCCAACCAAGAAGGCAGTGGAGTTTTGGTGAAAAAAGTGATTCAAGAAATGGAGTATAGGGGCCTTAAACCAATTGCATTTGCTTATACACAAACACAGGTGCAAGAACTCAAGCAAGATGAGATGACCTTATTAGCACTAATAGGTCTCAAATACAAATGCCAAGAATCGACAAAAACAGCTTTGAAAACCCTTCAAAAAAATGGAGTACATATCAAATTGGTTTCAGAGGATGATGACATCAGGATACTCAATGCCATGGCTTGTGAACTGGGAATTGAAGTGTCGATAGACGGTGGTCGCCTTGAAGGAAAGCAACTTCGTGATTTGGATGATAAAGCCAGATTGGTTAAAGTGGATAAAGCCATTGCAATGGGAAGTTTCAGTCCTAAAGACAAGCTTCTCATGGTAAAGTGTTTGCAAGACAGAGGTGATGTGGTTGCATTTATTGAACAAAGATTGATGACTAATCATATTTCAGACGTTTTAAAGCTAGCTGATTGCATTGGAAACAATCGTGAAATTGGGAAGAAGAAATTCTCCCCTAACAGCAGTCCAATTGATTTGGGTGAATGCACTAATGTGTCCTCTGGGTGGCCTAATGATGGTGATGGAATTAAGTAG 2229 0.3917 MSQTNISSDGGNIELGASLLTSGSKYNKIWRKSLYVGIMISLKKPTTFSSNYQESASSLPYTSLPHSPPARTSSTKSFVSIDVVSHVQEEEEGVRTDIARIVKEKDLKSLVELGGVGRVYHVLHGLTQHSSEENLGATFSGFLWKSCKQNLYTISMLLISALLSFATEFKQEGPRYGWHDGVAMIFAVLLLIAFSSITGFWRERKTIKLAKKKGEAMKCNVKRHEEFQVVDLTLSMYDIVVGDKVRLKPRDEVPADGLLLSGDHLVLAEGMKNEKIDCEVNPFLIAGSKVVEGHGWMLVTSVRNKSNASEIKRCLLENLIEKPISYLDKASLFIFTLVALVLFIRLICKKDGDDGGLPDIKGDNVSVSMLTELLENIFSRPQGRIAILAHIFSVIILCVQHGVPLMITLSLHYQNDEVVIDQEVVLNDFSACTTMGLVNVICIDVSGGALILKPMEVGEIWIGEGETDINNIQESGTCQVVLEKLKQGVCLSVLAPGLSHSHVFNSLVSWANTTLEMDIISFRDNFHIVKHGKLDSNQEGSGVLVKKVIQEMEYRGLKPIAFAYTQTQVQELKQDEMTLLALIGLKYKCQESTKTALKTLQKNGVHIKLVSEDDDIRILNAMACELGIEVSIDGGRLEGKQLRDLDDKARLVKVDKAIAMGSFSPKDKLLMVKCLQDRGDVVAFIEQRLMTNHISDVLKLADCIGNNREIGKKKFSPNSSPIDLGECTNVSSGWPNDGDGIK 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03680 742 Pfam E1-E2 ATPase 219 347 - -
Vifa1g03680 742 Gene3D - 292 473 - -
Vifa1g03680 742 Gene3D - 587 684 IPR023214 -
Vifa1g03680 742 SUPERFAMILY Calcium ATPase, transduction domain A 233 313 IPR008250 -
Vifa1g03680 742 Gene3D - 542 586 IPR023299 GO:0000166
Vifa1g03680 742 Gene3D - 193 291 - -
Vifa1g03680 742 PANTHER CATION TRANSPORTING ATPASE 130 547 - -
Vifa1g03680 742 SUPERFAMILY HAD-like 577 685 IPR036412 -
Vifa1g03680 742 SUPERFAMILY Calcium ATPase, transmembrane domain M 153 436 IPR023298 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03680 Vifa-Chr1 568627834 568630470 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03680 153 683 Primary Pumps ATPases AT3G22910 30.313 4.60e-50 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03680 K01537 - gmx:102661547 611.683