Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03675 ATGAAGATGGAGAGACACTCAACCACCCTCTTCATCAACACGCTCGTTTTCTTCTTCTTCTTCTTACAGTTTCATAGCTTTCTTTCACTCTCAGATTCTTCAATATTCCCTTATGAAGCACTTCCCACAAAATCAGGTTACCTACCAATAACTCCTTCTTCCACTTCCTCCATTTTCTACACTTTCTATGAAGCACAAAACTCCATTTCACCTCTCTCCCAAACCCCTCTTCTCATATGGCTTCAAGGTGGCCCTGGTTGCTCCTCCATGACAGGCAACTTCTATGAACTTGGTCCCTATCTTGTCACCAACTCACTCACCCTTCAACCCAACCCTTCTTCTTGGAACAGAATCTTTGGCCTTCTTTTTCTTGATAATCCCATTGGAACTGGCTTCAGTGTAGCCTCAACTCCACAAGAGATTCCAACTGATCAAAACGCGGTTGCAGAACATCTTTTTGCTGCTATTACAAGGTTTGTTCAACTTGATCATGTTTTCAAACATCGTCCTATTTATATCACTGGTGAAAGCTATGCTGGAAAGTACATTCCTGCAATTGGATGCTACATATTAGAGAAAAACGCTGTTTTGAAAGACTCTGAGAGAGTGAATTTAGCTGGTGTTGCTATTGGTAATGGATTAACAGATCCTGTGACCCAAATGGTTACTCATGCTGATAATGCTTATTACATTGGATTAATCAATGAGAGACAAAAAAATGAGCTGGAAAAATTACAACTTGAAGCTGTTGAGTTGGTAGAGAGAAAGAACTGGAGTGAAGCGACTCGTGCTAGAAACCGTGTATTGGACGTGTTGCAAAACATGACAGGATTGGCTACTTTGTATGATTATTCGCGAAAAGCTCCGTATGAAGATGAATTAGTTGCTAAGTTCTTGAACATTGGTGCGGTGAGGAAGGCCTTAGGAGTGAAAGTTGATGATTCGTCTGTTTATGAGAAATGCAGTAAAATTGTTTGGGCGGCATTGTATGCTGATTTGATGAAAAGTGTGAAGCATATGGTAGAGAAGTTATTGAAGGAGGAGATGAGGGTTTTGTTGTATCAAGGTCAGCGCGATTTGCGAGTTGGTGTGGTTCAAGTAGAGGCTTGGGTGAAGAGTATGAAGTGGGAAGGGATAGAGGAGTTTGTGAATGGTGAGAGGGAGATTTGGAAGGTGAATGGAGAGGTAGCTGGTTATGTGCAGAAATGGAAGTCTTTTACTAATGTTGTGGTTTTGGGGGGTGGACATCTTTTGCCTAGTGATCAACCTTTGAATTCTCAAGTGATGATAGAAGATTGGGTTTTGGAAAAGGGTTTGTTTGGAAGTGTGTTGGAACTAAATGTATCCACAAATTATGTACATGATGGATGA 1371 0.4106 MKMERHSTTLFINTLVFFFFFLQFHSFLSLSDSSIFPYEALPTKSGYLPITPSSTSSIFYTFYEAQNSISPLSQTPLLIWLQGGPGCSSMTGNFYELGPYLVTNSLTLQPNPSSWNRIFGLLFLDNPIGTGFSVASTPQEIPTDQNAVAEHLFAAITRFVQLDHVFKHRPIYITGESYAGKYIPAIGCYILEKNAVLKDSERVNLAGVAIGNGLTDPVTQMVTHADNAYYIGLINERQKNELEKLQLEAVELVERKNWSEATRARNRVLDVLQNMTGLATLYDYSRKAPYEDELVAKFLNIGAVRKALGVKVDDSSVYEKCSKIVWAALYADLMKSVKHMVEKLLKEEMRVLLYQGQRDLRVGVVQVEAWVKSMKWEGIEEFVNGEREIWKVNGEVAGYVQKWKSFTNVVVLGGGHLLPSDQPLNSQVMIEDWVLEKGLFGSVLELNVSTNYVHDG 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03675 456 Gene3D alpha/beta hydrolase 29 440 IPR029058 -
Vifa1g03675 456 ProSitePatterns Serine carboxypeptidases, serine active site. 173 180 IPR018202 GO:0004185
Vifa1g03675 456 Pfam Serine carboxypeptidase 42 434 IPR001563 GO:0004185|GO:0006508
Vifa1g03675 456 SUPERFAMILY alpha/beta-Hydrolases 42 435 IPR029058 -
Vifa1g03675 456 FunFam Carboxypeptidase 28 441 - -
Vifa1g03675 456 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 45 423 IPR001563 GO:0004185|GO:0006508
Vifa1g03675 456 PRINTS Carboxypeptidase C serine protease (S10) family signature 124 134 IPR001563 GO:0004185|GO:0006508
Vifa1g03675 456 PRINTS Carboxypeptidase C serine protease (S10) family signature 159 184 IPR001563 GO:0004185|GO:0006508
Vifa1g03675 456 PRINTS Carboxypeptidase C serine protease (S10) family signature 406 419 IPR001563 GO:0004185|GO:0006508
Vifa1g03675 456 PRINTS Carboxypeptidase C serine protease (S10) family signature 111 123 IPR001563 GO:0004185|GO:0006508
Vifa1g03675 456 Coils Coil 235 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03675 Vifa-Chr1 568018544 568019914 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03675 295 434 Calmodulin-binding Proteins AT2G22960 24.648 8.72e-09 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03675 K09645 - gmx:100780822 637.491