Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03672 ATGGAAGAAAATAAAGAGGAAGCGCTTAAGGCGGTAGAGATTGCTGAGAAGAAATTTTCTCAGAGGGATTTTGAAGGTGCGAAAAACTATGCTTTAAAGGCGAAAACTCTTTGTCCTGAGTTGGATGGTGTATCTCAAATGGTGGCGACGTTTGAAGTTTATTTTGCTTCTGAGTTTAGACATAATGGGAAGCTTGACTATTATTCGGTTCTTGGACTGAAACCTACTGCAGATGAAGCGGCTGTTAAAAGAAAGTACAAGAAGTTGGCAGTGTTGCTTCATCCAGATAAGAACAAATGTGTTGGAGCTGATGGGGCGTTTAAGCTTGTTTCCGAGGCGTGGACTTGTCTCGACAATGCCATGCGTAGTTCTTATGATCTCAAGAGAAGTTATTCTTCTGTTGTTCAGGCTACAGGTTATAACTGTTCCAATATGCCGCCAAACTCTTCTAGTAAACTCGACACCTTTTGGACAATCTGTACCGCTTGTAAGGTTCAGTATGAGTATATGCGCAAGTATGTGAATAAAAAACTCTCTTGTAAGAACTGCCGTGGCGTTTTTATTGCTGTTGAAACTGGTGCAGCCCCTGCAAATGGTTCATTTCCGTATCAACCTAGGCCATATGTGCCAGGAAATGGGTTTGGAAGTCAATCAATTGACGGAATGGGCTCTGCTGGTTTTATCCATCAAAATGGATCGCCTACTGCTCTACCTGCGGGTTCTGTTCATCAGGTCAATGGAAATGCAAAGAGGGGAAGACCAAAGGTCAAACCAGAAGTAGCTAATGGAAGGCATCCTATGGCGGAGACCATGGTCAACATAAACTCACATGTATCGTTCTCGTGTAATGAACTGCATGAAGTTAAGCTAGGTAGACCTGACAAGAAACGTAAACTTACGGTGGCAGCCAGTTTCAGAAACGGATATGATGAAAAAGGATCAAAATGTGCTTCAGATGCAGTAGTGTCAAATGGAAATGATAGCGTTGGAAATAGCAGACCTGGCCAGAAGCTTTCCGGTGTAAATGAAGTTCAAACCAAACACTGTTTCACTCCACCTGCATTTGATGCGAGGAAGTTATTGATTGAGAAAGCCAGGACAGTAATTAAGAAGAAACTCGAAGAAATGAAGTTGTCATCCGAAGCTGCAGTTCTAAAAGAAAAAGAAAAGGCGCAACTTCCGAATGTTGTTTGTCAAGTCAAAAGAGAGACATGTAGGAAAGCACCTCCGAATGTTGTTTCCGGTCTTTCATTTGAACACGGGAAAGCCAATCCGATCTCAATAACTGTCCCGGATTCTGATTTTCACGACTTCGACAAAGATAGGACAGAGGAATGTTTCCAGCCAAAGCAAGTATGGGCCTTATATGATGAGGAAGATGGAATGCCGCGATTGTATTGTCTGATCCGCGAGGTTATATCTGTTAATCCTTTTAAGATCCATATCAGTTACTTAAATTCCAAAACTGATACCGAGTTTGGCTCAGTAAACTGGCTTGAATCAGGTTTTACCAAATCTTGCGGAAATTTCAGGGCTTGGACTTCAGATATTGTCGACCAAGTCAACATATTTTCTCATGTTCTAAGCCGCGAAAAGGCTGGTCGAGGTGGTTGTGTCCGCATATATCCAAGAAGTGGAGATATTTGGGCTGTTTATCGAAATTGGTCACCAGATTGGAACCATTCTACACCTGACAAAGTAAGGCATGAATATGACATGGTGGAGGTGCTGTATGATTACTCTGAGGATCTCGGTGTCTGTGTTACTCCCCTTATCAAGTTAGCTGGATTCAAAACAGTATACAAAAGGAATCCTGACCAAAGTGCCGAAAGATGGATACCGAGAAGAGAAATGGTACGCCTTTCACATCAAGTTCCTTCTTGGTTGCTGAAAGGGGAGGAAAGCAAATTGCCGGATCGGTGTTTTGATCTTGATCCAGCTGCAACTCCGGACGAGCTTCTTCATACTGCTGCTACAGAAGCAAAAGCTTTGTAG 1995 0.4271 MEENKEEALKAVEIAEKKFSQRDFEGAKNYALKAKTLCPELDGVSQMVATFEVYFASEFRHNGKLDYYSVLGLKPTADEAAVKRKYKKLAVLLHPDKNKCVGADGAFKLVSEAWTCLDNAMRSSYDLKRSYSSVVQATGYNCSNMPPNSSSKLDTFWTICTACKVQYEYMRKYVNKKLSCKNCRGVFIAVETGAAPANGSFPYQPRPYVPGNGFGSQSIDGMGSAGFIHQNGSPTALPAGSVHQVNGNAKRGRPKVKPEVANGRHPMAETMVNINSHVSFSCNELHEVKLGRPDKKRKLTVAASFRNGYDEKGSKCASDAVVSNGNDSVGNSRPGQKLSGVNEVQTKHCFTPPAFDARKLLIEKARTVIKKKLEEMKLSSEAAVLKEKEKAQLPNVVCQVKRETCRKAPPNVVSGLSFEHGKANPISITVPDSDFHDFDKDRTEECFQPKQVWALYDEEDGMPRLYCLIREVISVNPFKIHISYLNSKTDTEFGSVNWLESGFTKSCGNFRAWTSDIVDQVNIFSHVLSREKAGRGGCVRIYPRSGDIWAVYRNWSPDWNHSTPDKVRHEYDMVEVLYDYSEDLGVCVTPLIKLAGFKTVYKRNPDQSAERWIPRREMVRLSHQVPSWLLKGEESKLPDRCFDLDPAATPDELLHTAATEAKAL 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03672 664 PANTHER BNAC03G44070D PROTEIN 1 650 - -
Vifa1g03672 664 Gene3D DnaJ domain 56 143 IPR036869 -
Vifa1g03672 664 SUPERFAMILY Chaperone J-domain 59 129 IPR036869 -
Vifa1g03672 664 SMART dnaj_3 65 122 IPR001623 -
Vifa1g03672 664 ProSiteProfiles dnaJ domain profile. 66 135 IPR001623 -
Vifa1g03672 664 Pfam DnaJ domain 66 126 IPR001623 -
Vifa1g03672 664 PRINTS DnaJ domain signature 86 101 IPR001623 -
Vifa1g03672 664 PRINTS DnaJ domain signature 68 86 IPR001623 -
Vifa1g03672 664 PRINTS DnaJ domain signature 102 122 IPR001623 -
Vifa1g03672 664 CDD DnaJ 66 119 IPR001623 -
Vifa1g03672 664 Pfam Domain of unknown function (DUF3444) 427 634 IPR024593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03672 Vifa-Chr1 567993307 567995403 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03672 4 247 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 29.588 1.12e-26 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03672 - - gmx:100788692 984.171