Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03665 ATGTCTTCCGCCGGCGGCAACCACGACCTTCCCCCCGGCGGAAACTCCGACGAACTCCGCCAATACTTTTGCCACCAGTGCGAACGCACAGCCTTCATTTCAACCTCCACCACCGATCTAATCTGTCCCAATTGCAACAGCACCTTCCTTGAGGAACTCGAAGCTCCAATCCCGAACCCTAACCCTAATCCCAACCCTATCCCTCCGTTTTTCTCCCACACCACCGACTTTCCCGCCGCTGGCTTCTCCTTTCCCCTCGTTTTCTCTGGTGGTGCCGCTCCTCAGCCATTCAATGATCTCTCCGCCTTGTTGTCGTCGTCGTCTCCGTCTCAGTCTGCGCCTTTCGGCGACGCGTTTAACCCGGTTGCCTTTATTCAAAACTATCTCCAGAACATGAGAGCGGGAGGAGGCAATGTTCAGTTCTTCATCAACGACGGCAATGATCCGGCTCCTCAGTTCCGGTTTCCCGGTAATGCTAATCCGGGGGATTATTTCTTTGGACCGGGGCTTGAGGATCTGATCCAGCAATTGGCTGAGAACGATCCGAGTCGGCGCGGGACTCCTCCCGCGTCAAAATCTGCTGTGGAAAAACTACCTGTTATCGAAGTTACCGGGGAGTTGCTGGAGTCCGATTCGTCTCAGTGCGCGGTGTGCAAAGACACATTTGTCCTTGGTGAAAAGGCCACGCAGATGCCGTGTAAGCACATTTATCATGCTGATTGTATCTTGCCGTGGCTGGAATTGCATAATTCCTGCCCTGTTTGTCGTCATGAGTTGCCAACAGATGACCCTGATTATGAGCAGAGGGCTCGCAGCGGTGGAAGTGGTTCTGGTGCTGCTGGTGGAGATGATTATGTGAGGAGGTTTAGGGTGTCTTTACCGTTTATGCCATTTAGGGCACCTTCTTCTGCTGCGGGGACAAGTAATGCTGGGAATGTTGACAACAATGATAACAACAATAGCAATAGTGAGCAATCCAATACCGAGACCAGACAAGAAGATCTCGACTGA 1011 0.5242 MSSAGGNHDLPPGGNSDELRQYFCHQCERTAFISTSTTDLICPNCNSTFLEELEAPIPNPNPNPNPIPPFFSHTTDFPAAGFSFPLVFSGGAAPQPFNDLSALLSSSSPSQSAPFGDAFNPVAFIQNYLQNMRAGGGNVQFFINDGNDPAPQFRFPGNANPGDYFFGPGLEDLIQQLAENDPSRRGTPPASKSAVEKLPVIEVTGELLESDSSQCAVCKDTFVLGEKATQMPCKHIYHADCILPWLELHNSCPVCRHELPTDDPDYEQRARSGGSGSGAAGGDDYVRRFRVSLPFMPFRAPSSAAGTSNAGNVDNNDNNNSNSEQSNTETRQEDLD 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03665 336 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 176 262 IPR013083 -
Vifa1g03665 336 SMART ring_2 215 255 IPR001841 -
Vifa1g03665 336 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 116 260 - -
Vifa1g03665 336 FunFam E3 ubiquitin-protein ligase RING1-like 176 262 - -
Vifa1g03665 336 ProSiteProfiles Zinc finger RING-type profile. 215 256 IPR001841 -
Vifa1g03665 336 MobiDBLite consensus disorder prediction 300 336 - -
Vifa1g03665 336 SUPERFAMILY RING/U-box 195 263 - -
Vifa1g03665 336 MobiDBLite consensus disorder prediction 302 328 - -
Vifa1g03665 336 CDD RING-H2_RNF126-like 214 256 - -
Vifa1g03665 336 Pfam Ring finger domain 214 256 IPR001841 -
Vifa1g03665 336 Pfam zinc-ribbon 21 53 IPR039525 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03665 Vifa-Chr1 566999250 567000260 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03665 173 272 C3H Transcription Factor Family AT5G15820 55.000 7.81e-36 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03665 K11982 - gmx:100818686 342.428