Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03657 ATGAACGGGAAAGCTTCCGTTTCTAAGGAGCTTCATGCCAAACACTCCAAGATCTTAGAGGGACTTCTTAAGCTACCTGACAATAAGGAATGTGCAGACTGTTGGACCAAGGCTCCGCGATGGGCTAGTGTGAACTTAGGAATTTTCATTTGCATGCAGTGTTCAGGGATTCACCGGAGTCTTGGAGTGCATGTATCAAAGGTGAGGTCCACTACTTTGGATACATGGCTACCAGATCAAGTTTCTTTCATGCAATTTATGGGTAATGTGAAGTCAAATAAGCACTGGGAGGCTAAACTAGCACCAGATTTTGACAGAAATGGATATGGAATCGAGAAGTTTATCCGTGCCAAGTATGTGGAGAAAAGATGGGCTTTGCAAGGTGAACTACCATCAGCTCCAAAGTCAACTGAAATCTTCTTTGAGATCAAAGAGTTACCAGCTGCGGCAGCCAAGAATGGTGTTCAGAAAAACAGGAGATTGTCTCTCGAGGAAAGCATTCTAGTGAATCACGTGGCACAAATTCGGCCTCCAATAGGGAAGTTTCACGAGGCCCCCTTAAATTTACCGATGAAGATATCACCACCGATCAAGAGGGCATCAGCATCACTTGATTTTGATAACGTCATTGGAAACAGCAACGCTGGACAACATTTGATTGAGAATGCAAGTTCTTGCCATGTTGCGCAAACATTGATCTGTACTGATCTGATTTGGGAACTAATTATTCAACCAACGCAGACTTCATCAGCAGATATAAATTAG 765 0.4327 MNGKASVSKELHAKHSKILEGLLKLPDNKECADCWTKAPRWASVNLGIFICMQCSGIHRSLGVHVSKVRSTTLDTWLPDQVSFMQFMGNVKSNKHWEAKLAPDFDRNGYGIEKFIRAKYVEKRWALQGELPSAPKSTEIFFEIKELPAAAAKNGVQKNRRLSLEESILVNHVAQIRPPIGKFHEAPLNLPMKISPPIKRASASLDFDNVIGNSNAGQHLIENASSCHVAQTLICTDLIWELIIQPTQTSSADIN 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03657 254 SUPERFAMILY ArfGap/RecO-like zinc finger 15 126 IPR037278 -
Vifa1g03657 254 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Vifa1g03657 254 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Vifa1g03657 254 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096
Vifa1g03657 254 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 139 IPR001164 GO:0005096
Vifa1g03657 254 FunFam stromal membrane-associated protein 1 isoform X1 1 129 - -
Vifa1g03657 254 Gene3D Arf GTPase activating protein 2 129 IPR038508 -
Vifa1g03657 254 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 215 IPR044520 GO:0005096
Vifa1g03657 254 CDD ArfGap 19 119 - -
Vifa1g03657 254 Pfam Putative GTPase activating protein for Arf 17 126 IPR001164 GO:0005096
Vifa1g03657 254 SMART arf_gap_3 13 130 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03657 Vifa-Chr1 564564832 564568069 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03657 19 124 C2H2 Transcription Factor Family AT3G07940 46.429 5.46e-27 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03657 K12486 - gmx:100780727 327.405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g03657 1 564564832 564568069 Vifa1g03657 1 564564832 564568069 ECH