Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03655 ATGCCTGACATGAATTCCTACCATTTTTTGCAACATGTTACACAGCAAATCAAAATTCCAGTCATTATGATGTGTGTTGATCAATCAATAACGCCAAGTCTAATGATGAAGGCGATTGAAAAAGGCGCTTGTGGATTTTGGATTAAGCCTTTGAGTGAAGGTCAAATCAATAACATATGGCAACATGTTGTAAGAAAATTTTTGAAAGAAAACAATCAGCATGATCAAGTTCTTGAAATCTTGAATGTAAAAGATTTGAAAAAAGGGAAAAAGATGATTATGCACCTACTTCTTCTTGTGATGATAATATTAACTATCAGCCTTCAACAAAGAGGAGTCGTTTTTCATGAGCAACTAAGAGGTATTTCCCTTGAAGCTCAATTTGTCCTTAACAAATATGATGCCAAATTGAATCATAAGCCAATTCTCATCTACATTTGTAAGTACTGGACTCGACATGTTGTTAGTAAGAAGATAGATGGTATCAGAAACAAAATTGAAGATGCTTCTAGGAGAAGAAAAGCATATGGTTTAGTGCAAATTCAAAGCCGAGTCGTATCTAAGATTCAAATATTACGTGCACGGATGCAACCGTATCTCGCTGCCAAGAAATCCAATGTGGTTGGATTTGATAATGACACACAAGTTCTGATGACGGAGTTACTGTCGGACGAGAAATGCCGCTGCATTACTTGGATTGTTGGAGTCGGAGGCACAGGTAAGACAACACTAGCCAATTTGATATTTGAAGACAACACTGTTGTAGCTCATTTTCAGCGTCGCGTATGGGTGTCACTGCCTTCAAATTGTATGACAGACCAGTTTGTTGCAGAAATTGGCAAGGAGACCGCTAAGAAAATTACAGTAGAAGAAGAAAACATGCCCACTGATTACGTACTCACAACCTTGGCACACTCAAAGTACCTTATAGTTGTTGATGGCCTTAAAGAAACATCCAAAGTATACTTGGATACCTTGAACAGGGTCATACCTGATATGTTAACAGGAAGGAAAGTTCTTTTTACTACTCGCAATGCAACAGTAGCCCAACATGCAGCAGGTAGAATCATTCTTCACCCATTACAGTTATTAGATGATGAAACTAGTTGGCTGTTGTTCACAAGACATTTGAAGGTCCCCAAGTCAGAAACAAAACTTATCAAGGTTGGAAAAGAAATTGTGATGAAATGTGGGGGACTGCCATCACAAATACTGAAAATAAGTGATTTGCTTTCACATAAAGATGTTACACATGAGGAAACTCTTAACCCATCCACGGTTCAGCCCTGCATAGAAAGATTAAAAAGCAAAAGTCAATAA 1320 0.378 MPDMNSYHFLQHVTQQIKIPVIMMCVDQSITPSLMMKAIEKGACGFWIKPLSEGQINNIWQHVVRKFLKENNQHDQVLEILNVKDLKKGKKMIMHLLLLVMIILTISLQQRGVVFHEQLRGISLEAQFVLNKYDAKLNHKPILIYICKYWTRHVVSKKIDGIRNKIEDASRRRKAYGLVQIQSRVVSKIQILRARMQPYLAAKKSNVVGFDNDTQVLMTELLSDEKCRCITWIVGVGGTGKTTLANLIFEDNTVVAHFQRRVWVSLPSNCMTDQFVAEIGKETAKKITVEEENMPTDYVLTTLAHSKYLIVVDGLKETSKVYLDTLNRVIPDMLTGRKVLFTTRNATVAQHAAGRIILHPLQLLDDETSWLLFTRHLKVPKSETKLIKVGKEIVMKCGGLPSQILKISDLLSHKDVTHEETLNPSTVQPCIERLKSKSQ 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03655 439 SUPERFAMILY CheY-like 1 73 IPR011006 -
Vifa1g03655 439 Gene3D - 192 357 IPR027417 -
Vifa1g03655 439 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 192 420 IPR027417 -
Vifa1g03655 439 PRINTS Disease resistance protein signature 230 245 - -
Vifa1g03655 439 PRINTS Disease resistance protein signature 302 316 - -
Vifa1g03655 439 PRINTS Disease resistance protein signature 397 411 - -
Vifa1g03655 439 PANTHER DISEASE RESISTANCE PROTEIN RP 83 418 IPR044974 GO:0006952
Vifa1g03655 439 Pfam NB-ARC domain 217 419 IPR002182 GO:0043531
Vifa1g03655 439 Gene3D - 363 438 IPR042197 -
Vifa1g03655 439 Gene3D - 1 77 - -
Vifa1g03655 439 ProSiteProfiles Response regulatory domain profile. 1 64 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03655 Vifa-Chr1 564347256 564348735 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03655 1 79 Response Regulator Gene Family AT2G01760 43.902 2.43e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03655 - - mtr:25484817 474.937