Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03636 ATGATGTCTTCCTACACTTTTCAGCTTCTTATTTCATCTTTTCTTGTTTTTTCTTTCTTCTTACAAGTGCAACCATCCTTTGCCATTGGAAAGTCCTATGTTGTTTACTTAGGAGCACATTCTCATGGCCTAAATCCTTCTTCTGCTGATTTAAACTACGCAACGAAATCACATTATAGTTTATTGAGCTCTATCCTAGGGAGCTATGAGAAAGCCAAAGATGCAATATTCTACTCGTATAATCGACACATCAATGGTTTCGCAGCAATCTTGGAAGACGAAGAAGCAGAAGAGCTTGCGAGAAACCCAAATGTAGTGTCTGTATCCTTGAACAAAATGCATGAACTGCATACAACAAGGTCTTGGGAGTTTCTTGGACTAGAAGGTAATGGAATAGCTCCTAAGGACTCTAGTTGGGAGTTGGCAAGATATGGTGAAGGCACAATCATTGGTAACCTTGATACAGGTGTATGGCCGGAATCTGAGAGCTTTAGTGATCAAGGAATGGGCCCCATTCCGTCTAAGTGGCGTGGAGACGGGATATGTGAAATCGACAATTTTATTGACTCAAACAAAAGTTATTGCAACAGGAAGCTGATTGGAGCTAGAATTTTCTACAGAGGTTATGAGGTGAATGCAGGCATATGGAATGAATCATTTTACACTGCACGAGACACGACGGGCCACGGTTCTCACACTCTATCAACAGCTGGAGGTAATTTTGTTCAAGGAGTAAGTATTTTCGGAAATGGTAACGGCACTGCCAAAGGTGGGTCTCCAAAATCCCATGTTGCAGCCTATAAAGTGTGTTGGCCAGGACAAGGGATACATTCGGGTGGCTGCTATGATGCAGATATCTTAGCTGGTTTCGAAGCTGCCATAAGTGATGGTGTTGATGTGATTTCAGTTTCTCTGGGTGCAAATTCTCGTAATCTGTTCGCAGATTCAATTGCTATAGGCTCTTTTCATGCAGTTGCCAATGGTATAGTAGTAGTTACTGCTGCGGGAAACTCTGGACCTTATTTCGGAACTGTTTCTAATACTGCACCTTGGTTATTCACCGTTGCTGCTAGCACAATAGATCGAGACTTCACCAGTTATGTTAAGCTAGGTGACAACAAGTACCTTAAGGGGACAAGTCTTTCGTCTAAGGACTTGCCATCACAAAAGTTCTATCCTTTGATTACTGCAGAAGATGCAAAACATTCCTATGCTCTAACTACAGCTGCGAGACAATGCCGTTACGGAACACTTGATGTTGAAAAAGTGAAGGGTAAAATAGTGGTCTGCCTTGAAGATGAATATCTTGGAACTTTTCATCCAGGTGCAGAAGCTTTTTCTGCAGGAGCAGTAGGAATGATTTTGGCTAGTGAAATTGATAGCTTCTATGATTCTACTGCATACCCTCATATTTTACCTACTTCATATGTCAATTACACTGATTCTCAATATGTTTTTTCCTACATCAGAAGTGAAAAGAACCCTGTTGCTTACATAACAAAAGCAGTAACAGAAACTCCGATAATTCCAGCCCCGGTGATTGCTTCATTCTCATCAAGAGGACCTAGCACCATTCTTCCATCAATCCTAAAACCTGACATCACTGCACCTGGTGTGAACATAATTGCTGCTTACACAGAAGCCACAACTGAAAATGAAGATAAAAGAAGGACTTCATACAGATCCTTGTCTGGAACTTCTATGTCATGCCCACATGTGTCCGGCGTCGTAGGCCTTTTCAAAACACTTCATCCTGAATGGAGTCCAGCAGCTATCAAATCCGCAATCATGACCACTGCAAGTGGAATGGATAACAGCGAAAAGCCTATCAAGGATCGCTTTGACGAAAACGCAACTCCATTTGCATATGGTTCAGGTCACATCCAACCTGATCTTGCTCTAGACCCGGGACTAATTTACGATCTTGAAGTGATTGATTACATGAACCTACTATGCTCAGATGCTCAATGGCATAAACAAGTTGAGGCTATTTATAACAGACCCTTCATTTGTCCAAAGCTCTACAATGTGGTGGATTTCAACTACCCTACAATTACAATACTTGATCTAGGGCACAAAGCAGTAGTTGCTAGTCGAACCGTTACGAATGTCGGACCTCCGAGTAGATATGAACTGCAAATAAAGGCACCTGATGGAGTTTCTGTTTATGTTGTGCCAAGTTTCTTGAGCTTCAAGGAAGTTGGTGAGAAGAGATCATTCAAGGTTATTGTAAGGAAAAGTAGGAAGAAGGGTAATGCTACAATGGAATATGTGTTTGGGGAGTTGTTATGGTCAAATGGAAAACATAGAGTTAGGAGTACTATTGTTGTTAAGCTCAAGTAG 2343 0.4153 MMSSYTFQLLISSFLVFSFFLQVQPSFAIGKSYVVYLGAHSHGLNPSSADLNYATKSHYSLLSSILGSYEKAKDAIFYSYNRHINGFAAILEDEEAEELARNPNVVSVSLNKMHELHTTRSWEFLGLEGNGIAPKDSSWELARYGEGTIIGNLDTGVWPESESFSDQGMGPIPSKWRGDGICEIDNFIDSNKSYCNRKLIGARIFYRGYEVNAGIWNESFYTARDTTGHGSHTLSTAGGNFVQGVSIFGNGNGTAKGGSPKSHVAAYKVCWPGQGIHSGGCYDADILAGFEAAISDGVDVISVSLGANSRNLFADSIAIGSFHAVANGIVVVTAAGNSGPYFGTVSNTAPWLFTVAASTIDRDFTSYVKLGDNKYLKGTSLSSKDLPSQKFYPLITAEDAKHSYALTTAARQCRYGTLDVEKVKGKIVVCLEDEYLGTFHPGAEAFSAGAVGMILASEIDSFYDSTAYPHILPTSYVNYTDSQYVFSYIRSEKNPVAYITKAVTETPIIPAPVIASFSSRGPSTILPSILKPDITAPGVNIIAAYTEATTENEDKRRTSYRSLSGTSMSCPHVSGVVGLFKTLHPEWSPAAIKSAIMTTASGMDNSEKPIKDRFDENATPFAYGSGHIQPDLALDPGLIYDLEVIDYMNLLCSDAQWHKQVEAIYNRPFICPKLYNVVDFNYPTITILDLGHKAVVASRTVTNVGPPSRYELQIKAPDGVSVYVVPSFLSFKEVGEKRSFKVIVRKSRKKGNATMEYVFGELLWSNGKHRVRSTIVVKLK 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03636 780 FunFam Subtilisin-like protease SBT5.3 21 117 - -
Vifa1g03636 780 CDD Peptidases_S8_3 114 601 IPR034197 -
Vifa1g03636 780 ProSitePatterns Serine proteases, subtilase family, serine active site. 565 575 IPR023828 -
Vifa1g03636 780 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 70 777 IPR045051 -
Vifa1g03636 780 Pfam Peptidase inhibitor I9 32 117 IPR010259 -
Vifa1g03636 780 CDD PA_subtilisin_like 367 499 - -
Vifa1g03636 780 ProSiteProfiles Serine proteases, subtilase domain profile. 121 634 - -
Vifa1g03636 780 FunFam subtilisin-like protease SBT1.5 361 506 - -
Vifa1g03636 780 SUPERFAMILY Subtilisin-like 116 638 IPR036852 GO:0004252|GO:0006508
Vifa1g03636 780 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 23 117 IPR037045 -
Vifa1g03636 780 Pfam Fibronectin type-III domain 679 777 IPR041469 -
Vifa1g03636 780 Pfam PA domain 412 481 IPR003137 -
Vifa1g03636 780 Gene3D - 361 506 - -
Vifa1g03636 780 Pfam Subtilase family 145 626 IPR000209 GO:0006508|GO:0008236
Vifa1g03636 780 PRINTS Subtilisin serine protease family (S8) signature 564 580 IPR015500 -
Vifa1g03636 780 PRINTS Subtilisin serine protease family (S8) signature 145 164 IPR015500 -
Vifa1g03636 780 PRINTS Subtilisin serine protease family (S8) signature 225 238 IPR015500 -
Vifa1g03636 780 Gene3D - 651 779 - -
Vifa1g03636 780 FunFam Subtilisin-like protease SBT1.5 147 372 - -
Vifa1g03636 780 Gene3D Peptidase S8/S53 domain 147 647 IPR036852 GO:0004252|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03636 Vifa-Chr1 560212990 560216472 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03636 32 779 Subtilisin-like Serine Gene Family AT2G04160 54.449 0.0 790
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03636 - - pcin:129318364 911.753