LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa1g03617	ATGAATACTAAGTCGGCTGAGGATTTGATGGAGTGTTCCTCTGAGGTTCATTATTCTGGATTCCATATGGATGGTATAGAGCAAAGAAATGTTGGTACAGAGCAACCAACCACGTCTGCGATTGATGAGTATAAGCAACCTTTTCTTATAGGTGTTGCGGGGGGATCGGCATCTGGCAAGACAGCTGTTTGTGATATGATTATTCAACAGCTTCATGATCAGCGGGTTGTACTTGTTAATCAGGATTCCTTTTACCATAACTTGACCGAGGAGGAACTTAAAAGAGTACAAGACTACAATTTTGATCATCCTGAAGCTTTTGATACGGAGCGATTGGTAACTGTCATAGACAAATTGAAGAATAGCCAAGCAGTGGATATACCGAAGTATGACTTTAAGGGTTACAAGAACAATGTGTTTCCCGCTAGAAGGGTAAACCCTGCAGATGTTATAATTTTAGAAGGCATCCTTGTTTTCCATGACCCGCGTGTCAGGGCATTGATGAATATGAAGATATTTGTTGACACAGATGCTGATGTTCGTCTGTCAAGAAGGATTAAGCGTGATACTGCCGATAATTCACGTAATATTGAAGCAGTGCTTGACCAGTATTCAAAATTTGTGAAGCCGGCTTTTGATGACTTTATCCTTCCTTCAAAGAAGTATGCTGATATCATTATACCCCGTGGAGGAGATAATCATGTAGCCATTGATTTGATTGTGCAGCATATTCGCACAAAGCTTGGTCAGCATGACCTCTGTAAAATATATCCTAATTTATATGTCATTCAGTCTACTTTTCAGATACGGGGCATGCACACCCTGATACGCGATTCTCAAACAAAGAAGCATGACTTTGTATTTTATGCTGACCGTTTGATTCGTTTGGTCGTAGAACATGGCCTAGGACATCTTCCATTTACAGAAAAGCAAGTAATCACTCCTACTGGGTCTGTATACAGTGGTGTGGATTTTTGTAAGAGGTTGTGTGGTGTCTCCATTATCAGAAGTGGGGAAAGCATGGAGAATGCTTTGCGAGCATGCTGTAAAGGTATCAAGATTGGTAAAATTCTTATTCATAGAGAAGGTGACAACGGTCAGCAGCTAGTATATGAAAAGCTGCCAAATGATATCTCAGATAGGCATGTGTTACTGTTGGATCCTATTTTAGGCACAGGTAATTCTGCTGTTGAAGCAATTTCTTTAATTATAAGAAAGGGTGTTCCAGAGTCCAACATTATATTTCTCAACCTTATATCAGCACCTCAAGGTCTGCATATGGTCTGCAAAAGATTTCCAAGAATAAAAATTGTGACATCGGAGATTGACATTGGTTTAAATGAAGATTTCCGTGTCATTCCTGGAATGGGCGAATTTGGCGATCGATATTTTGGAACAGATGATGACGACGAGCTCGTGGAGAGCCGTTCGCTATAG	1437	0.4043	MNTKSAEDLMECSSEVHYSGFHMDGIEQRNVGTEQPTTSAIDEYKQPFLIGVAGGSASGKTAVCDMIIQQLHDQRVVLVNQDSFYHNLTEEELKRVQDYNFDHPEAFDTERLVTVIDKLKNSQAVDIPKYDFKGYKNNVFPARRVNPADVIILEGILVFHDPRVRALMNMKIFVDTDADVRLSRRIKRDTADNSRNIEAVLDQYSKFVKPAFDDFILPSKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQHDLCKIYPNLYVIQSTFQIRGMHTLIRDSQTKKHDFVFYADRLIRLVVEHGLGHLPFTEKQVITPTGSVYSGVDFCKRLCGVSIIRSGESMENALRACCKGIKIGKILIHREGDNGQQLVYEKLPNDISDRHVLLLDPILGTGNSAVEAISLIIRKGVPESNIIFLNLISAPQGLHMVCKRFPRIKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGTDDDDELVESRSL	478

Showing 1 to 1 of 1 entries

Previous1Next

Annotation information

Show entries

Search:

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Vifa1g03617	478	PANTHER	URIDINE KINASE	36	376	-	-
Vifa1g03617	478	Gene3D	-	251	466	IPR029057	-
Vifa1g03617	478	CDD	PRTases_typeI	324	439	IPR000836	-
Vifa1g03617	478	PRINTS	Uridine kinase signature	122	137	-	-
Vifa1g03617	478	PRINTS	Uridine kinase signature	77	88	-	-
Vifa1g03617	478	PRINTS	Uridine kinase signature	179	189	-	-
Vifa1g03617	478	PRINTS	Uridine kinase signature	215	228	-	-
Vifa1g03617	478	PRINTS	Uridine kinase signature	193	204	-	-
Vifa1g03617	478	PRINTS	Uridine kinase signature	47	64	-	-
Vifa1g03617	478	CDD	UMPK	49	247	IPR000764	-

Showing 1 to 10 of 18 entries

Previous1 2Next

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa1g03617	Vifa-Chr1	559568744	559573766	Dispersed/Wgd

Showing 1 to 1 of 1 entries

Previous1Next

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa1g03617	1	469	PRT Gene Family	AT4G26510	81.818	0.0	798

Showing 1 to 1 of 1 entries

Previous1Next

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa1g03617	K00876		-	gmx:100798205	877.47

Showing 1 to 1 of 1 entries

Previous1Next

Event-related genes

Show entries

Search:

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vifa1g03617	1	559568744	559573766	Vifa1g03617	1	559568744	559573766	ECH
	Vifa1g03617	1	559568744	559573766	Vifa1g03617	1	559568744	559573766	PCT

Showing 1 to 2 of 2 entries

Previous1Next