Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03617 ATGAATACTAAGTCGGCTGAGGATTTGATGGAGTGTTCCTCTGAGGTTCATTATTCTGGATTCCATATGGATGGTATAGAGCAAAGAAATGTTGGTACAGAGCAACCAACCACGTCTGCGATTGATGAGTATAAGCAACCTTTTCTTATAGGTGTTGCGGGGGGATCGGCATCTGGCAAGACAGCTGTTTGTGATATGATTATTCAACAGCTTCATGATCAGCGGGTTGTACTTGTTAATCAGGATTCCTTTTACCATAACTTGACCGAGGAGGAACTTAAAAGAGTACAAGACTACAATTTTGATCATCCTGAAGCTTTTGATACGGAGCGATTGGTAACTGTCATAGACAAATTGAAGAATAGCCAAGCAGTGGATATACCGAAGTATGACTTTAAGGGTTACAAGAACAATGTGTTTCCCGCTAGAAGGGTAAACCCTGCAGATGTTATAATTTTAGAAGGCATCCTTGTTTTCCATGACCCGCGTGTCAGGGCATTGATGAATATGAAGATATTTGTTGACACAGATGCTGATGTTCGTCTGTCAAGAAGGATTAAGCGTGATACTGCCGATAATTCACGTAATATTGAAGCAGTGCTTGACCAGTATTCAAAATTTGTGAAGCCGGCTTTTGATGACTTTATCCTTCCTTCAAAGAAGTATGCTGATATCATTATACCCCGTGGAGGAGATAATCATGTAGCCATTGATTTGATTGTGCAGCATATTCGCACAAAGCTTGGTCAGCATGACCTCTGTAAAATATATCCTAATTTATATGTCATTCAGTCTACTTTTCAGATACGGGGCATGCACACCCTGATACGCGATTCTCAAACAAAGAAGCATGACTTTGTATTTTATGCTGACCGTTTGATTCGTTTGGTCGTAGAACATGGCCTAGGACATCTTCCATTTACAGAAAAGCAAGTAATCACTCCTACTGGGTCTGTATACAGTGGTGTGGATTTTTGTAAGAGGTTGTGTGGTGTCTCCATTATCAGAAGTGGGGAAAGCATGGAGAATGCTTTGCGAGCATGCTGTAAAGGTATCAAGATTGGTAAAATTCTTATTCATAGAGAAGGTGACAACGGTCAGCAGCTAGTATATGAAAAGCTGCCAAATGATATCTCAGATAGGCATGTGTTACTGTTGGATCCTATTTTAGGCACAGGTAATTCTGCTGTTGAAGCAATTTCTTTAATTATAAGAAAGGGTGTTCCAGAGTCCAACATTATATTTCTCAACCTTATATCAGCACCTCAAGGTCTGCATATGGTCTGCAAAAGATTTCCAAGAATAAAAATTGTGACATCGGAGATTGACATTGGTTTAAATGAAGATTTCCGTGTCATTCCTGGAATGGGCGAATTTGGCGATCGATATTTTGGAACAGATGATGACGACGAGCTCGTGGAGAGCCGTTCGCTATAG 1437 0.4043 MNTKSAEDLMECSSEVHYSGFHMDGIEQRNVGTEQPTTSAIDEYKQPFLIGVAGGSASGKTAVCDMIIQQLHDQRVVLVNQDSFYHNLTEEELKRVQDYNFDHPEAFDTERLVTVIDKLKNSQAVDIPKYDFKGYKNNVFPARRVNPADVIILEGILVFHDPRVRALMNMKIFVDTDADVRLSRRIKRDTADNSRNIEAVLDQYSKFVKPAFDDFILPSKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQHDLCKIYPNLYVIQSTFQIRGMHTLIRDSQTKKHDFVFYADRLIRLVVEHGLGHLPFTEKQVITPTGSVYSGVDFCKRLCGVSIIRSGESMENALRACCKGIKIGKILIHREGDNGQQLVYEKLPNDISDRHVLLLDPILGTGNSAVEAISLIIRKGVPESNIIFLNLISAPQGLHMVCKRFPRIKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGTDDDDELVESRSL 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03617 478 PANTHER URIDINE KINASE 36 376 - -
Vifa1g03617 478 Gene3D - 251 466 IPR029057 -
Vifa1g03617 478 CDD PRTases_typeI 324 439 IPR000836 -
Vifa1g03617 478 PRINTS Uridine kinase signature 122 137 - -
Vifa1g03617 478 PRINTS Uridine kinase signature 77 88 - -
Vifa1g03617 478 PRINTS Uridine kinase signature 179 189 - -
Vifa1g03617 478 PRINTS Uridine kinase signature 215 228 - -
Vifa1g03617 478 PRINTS Uridine kinase signature 193 204 - -
Vifa1g03617 478 PRINTS Uridine kinase signature 47 64 - -
Vifa1g03617 478 CDD UMPK 49 247 IPR000764 -
Vifa1g03617 478 FunFam Uridine kinase 44 250 - -
Vifa1g03617 478 Pfam Phosphoribulokinase / Uridine kinase family 49 235 IPR006083 GO:0005524|GO:0016301
Vifa1g03617 478 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 43 240 IPR027417 -
Vifa1g03617 478 SUPERFAMILY PRTase-like 250 467 IPR029057 -
Vifa1g03617 478 Gene3D - 43 250 IPR027417 -
Vifa1g03617 478 NCBIfam uridine kinase 45 247 IPR000764 -
Vifa1g03617 478 Pfam Uracil phosphoribosyltransferase 265 466 - -
Vifa1g03617 478 FunFam Uridine kinase 251 466 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03617 Vifa-Chr1 559568744 559573766 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03617 1 469 PRT Gene Family AT4G26510 81.818 0.0 798
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03617 K00876 - gmx:100798205 877.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g03617 1 559568744 559573766 Vifa1g03617 1 559568744 559573766 ECH
Vifa1g03617 1 559568744 559573766 Vifa1g03617 1 559568744 559573766 PCT