Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03611 ATGAAACGTTTTGATAGAGACGAAGTTCCAATTCTGTCAGAAACACGTGGACAACGATCTGATGAACCTGTGGATTCTAATTTGCGAAGGAACATTTCAAGGACACGAAGTGCTTCAATCTCTATTTCTATGGCTGCCTCTGATCCATATGAGAGACAACCACATCTTGTCGGACATACTGGTCCGCTTCGCAGCGCAAGGAAAACTCCGGTCAGCCAAATGAGTGGTCCACTATATCCTACTCCTGCAACTGGTAATCCTTTTCAGAATAGTATAGTAGTGGCGGGAAACAGAGTAGGAGAGAACAAGACAGAGAAGTTTGATGACAATGATGAAAATCATCGGAATAATAAATATGATAGAAAAAATGAACATTTAGTGAGGTCTGGACAACTCGGAATGTGTAATGATCCTTATTGTACTACTTGTCCTACTTACTTCAAAGTTTCTCAGAAAAGAAAGCCACGAGCTTCCACTATATTTGATCCTAAGTTCCACAATTCTCTTTATGGCGAAGCCAAAGGTTTTGGAAGAAAACTTTCTTCTTTCTGCTTTTCATGCATTCCTGGAGTTATGAACCCTCACACTAAAGTTGTACAACAATGGAACAAATTTTTGGCCATATTTTGCTTGGTCGCAATTTTTGTTGATCCATTGTTTTTCTTCTTGATCTATGTGAACAAGGATAATAAATGTATTCAGATCAACTGGGCAATGGCAACAACACTCGTCGTACTAAGAAGCATAACTGATTTTGTGTATTTATTGAACATTCTTCTCCAGTTTAGGTTGGCTTATGTTTCTCCTGAGTCTAGGGTGGTTGGTGCTGGAGATTTAATTGACAATCCCACGAAAATTGCTCTTAATTATTTTAAGAGTTATTTTTTCTTCGACTTATTTGTTGTATCACCTCTTCCTCAGGTAATGATATTGTTTGTCCTACCAAGTTCCTTGGGGTCATCAGGAGCAAATTATGTTAAGAATCTTCTACGCCTAGCGATTCTTGTACAATATATTCCCCGATTGTTCAGATTTTTGCCTCTTCTAATTGGCCAGTCTCCAACCGGATTCATATTTGAGTCAGCTTGGGCAAATTTCATTATAAATCTTCTCATTTTTATGCTATCCGGCCATGTTGTTGGGTCATGCTGGTATCTCTTTGGTCTACAGCGGGTTAACCAATGTTTGCGTGATGCCTGCCATCATGCTAATCTACCTGGATGCATGGATTTGATTGATTGTGAATCTGACGGGGAGACATTGGCTAAGTGGGCTAATGATAAGGGTGCCAATGCTTGTTTGAATTCCTCATCTGATGCTTTTTCTTATGGAATCTACACCTATGCTGTACCACTTACAATAGAAACTAGGGTGATCAACAAATATGTGTACGCACTATTTTGGGGATTCCAGCAAATTAGTACCTTGGCTGGGAACCAAGTCCCAAGCTATTTTGTGTGGGAAGTCCTCTTTACAATGTCCATCATTGGATTGGGACTCTTGCTTTTTGCGCTTCTCATTGGAAACATTCAGAACTTTCTTCAAGCTCTTGGACGAAGGAGGTTGGAAATGCAGCTTAGAGGTCGCGATGTTGAGCAGTGGATGAGTCATCGTCGCTTACCAGAAGATCTCAAAAGGAGAGTTCGGCAGGCTGAACGGTATAGTTGGGCTGCAACAAGAGGTGTTCCTGAAAAAATGGTTTTGGAGAATTTGCCAGAAGATCTCGTGACAGACATACGACGTCATCTCTTCAAATTTGTTAATAAAGTTCGTATTTTTTCCCTGATGGATGAGGATGAGCCTATCTTAGACGCCATTCGTGAGCGACTAGTACAAACGACATACATCAAAGGAAGTAAAATTTTGAGTCAGGGCTGTCTAGTGCAGAAAATGTTGTTTATCGTGCGTGGAAAATTGGAGAGCATTGGAGAAGATGGAATTCCGGTTCCGTTAACTGAAGGGGATGCATGTGGCGAAGAACTTTTAAGACAGTATCTTGAACAATCTTCTGAAAGCAAAGAAGGTAAAAAAGTAAAGCTTCAAGGACAAGGGTTGACTAGTGACAGAACGGTAAGATGCTTGACTAATGTTGAGGCATTTTCACTCCGCTCTAAAGACATTGAAGAAGTGACAACTCTTTTCGCAAGATTCTTGCGGAGCCCTCGTGTTCAAGGAGTCATAAGGTATGAATCTCCTTATTGGAGATCACTTGCAGCAAACAGAATTCAGGTTGCATGGAGATACAGGAAAAAGCGTCTAAGTAGAGCTAATACCACTCAATGA 2283 0.406 MKRFDRDEVPILSETRGQRSDEPVDSNLRRNISRTRSASISISMAASDPYERQPHLVGHTGPLRSARKTPVSQMSGPLYPTPATGNPFQNSIVVAGNRVGENKTEKFDDNDENHRNNKYDRKNEHLVRSGQLGMCNDPYCTTCPTYFKVSQKRKPRASTIFDPKFHNSLYGEAKGFGRKLSSFCFSCIPGVMNPHTKVVQQWNKFLAIFCLVAIFVDPLFFFLIYVNKDNKCIQINWAMATTLVVLRSITDFVYLLNILLQFRLAYVSPESRVVGAGDLIDNPTKIALNYFKSYFFFDLFVVSPLPQVMILFVLPSSLGSSGANYVKNLLRLAILVQYIPRLFRFLPLLIGQSPTGFIFESAWANFIINLLIFMLSGHVVGSCWYLFGLQRVNQCLRDACHHANLPGCMDLIDCESDGETLAKWANDKGANACLNSSSDAFSYGIYTYAVPLTIETRVINKYVYALFWGFQQISTLAGNQVPSYFVWEVLFTMSIIGLGLLLFALLIGNIQNFLQALGRRRLEMQLRGRDVEQWMSHRRLPEDLKRRVRQAERYSWAATRGVPEKMVLENLPEDLVTDIRRHLFKFVNKVRIFSLMDEDEPILDAIRERLVQTTYIKGSKILSQGCLVQKMLFIVRGKLESIGEDGIPVPLTEGDACGEELLRQYLEQSSESKEGKKVKLQGQGLTSDRTVRCLTNVEAFSLRSKDIEEVTTLFARFLRSPRVQGVIRYESPYWRSLAANRIQVAWRYRKKRLSRANTTQ 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03611 760 Gene3D Jelly Rolls 590 716 IPR014710 -
Vifa1g03611 760 SUPERFAMILY Voltage-gated potassium channels 194 520 - -
Vifa1g03611 760 ProSiteProfiles cAMP/cGMP binding motif profile. 594 662 IPR000595 -
Vifa1g03611 760 MobiDBLite consensus disorder prediction 44 72 - -
Vifa1g03611 760 CDD CAP_ED 592 710 IPR000595 -
Vifa1g03611 760 MobiDBLite consensus disorder prediction 1 32 - -
Vifa1g03611 760 MobiDBLite consensus disorder prediction 1 29 - -
Vifa1g03611 760 Pfam Ion transport protein 204 520 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vifa1g03611 760 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 135 755 - -
Vifa1g03611 760 Gene3D Helix hairpin bin 519 584 - -
Vifa1g03611 760 Gene3D - 203 517 - -
Vifa1g03611 760 SUPERFAMILY cAMP-binding domain-like 520 713 IPR018490 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03611 Vifa-Chr1 558470342 558474912 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03611 5 670 Ion Channels AT3G17700 57.941 0.0 758
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03611 K05391 - ccaj:109789004 1132.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g03611 1 558470342 558474912 Vifa1g03611 1 558470342 558474912 ECH