Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03608 ATGCCTCAGGATAATAGCTTATTAAACTCGATTTTCGCATCAACGTCCAAAAGGATATTGAATTTGAAGAGTTCAGTTTTTAATAACAGTGATGTGAATGATGAGATCAATGATCATGAATTGGCTCATAGAAAAGCAGAAGAAGCAGCGTTGAGGAGGAATGAGGCAGCGGAATGGCTAAGAGAAATGGATGAAGTGGCTTGTTTAACATTGAGTAAACAACCTTCTGAGGAAGAGTTCTGTGGTGCTCTTCGGAATGGGCTTATTCTTTGTAATGTTCTTAATAGAGTTAATCCGGGTGCTATTCTTAAGGTGGTGGATAATCATGTTCTTGAGGTTGATTCTTTGGAGGGACATGCACATTCTGCTATTCAGTATTTTGAAAACATGAAGAATTTTCTTGATGCTGTTGAGGATATGACTCTCTTGACCTTTGAAGCTTCTGATTTGGAAAAGGGCGGTTCATCAAGTAAAGTTGTGGACTGCATTCTGTGTTTGAAAGGGTATTATGAATGGAAGCTATCAGGTGGAGTTGGGGTTTGGAGGTATGGAGGAACTGTTAGGATTACTTCTTTCCCCAAAGGAACTCCTTCTTCCAATTTGGGCAGTGAAAGTGCTGATGAGTCCCTCGAGGAATCTCAATCCTCGCAGTATCAACAGTTGCTTGAATTTCTTCATATGTTTCCGGAGGTTTCAATTGAAGAAACCAAAACTGCGAGTGCTCTGGCTTTCCTGTTTGATCACTTTGGACTCAAACTTCTCCAGGCTTTCGTCAGAGAGACTGATGAAGCTGATGATCTACCACTCAATGCAATGGTAATTGATACATTTCTGAACAAGATAGTAAGGGATTTCTCCGCATTACTTGCTTCTCAAGGCACTCAGCTTGCATTTTTCCTCAAGAAAATATTGAAAGGAGATAATGACTGTCTTTCTAAGAGAGAATTCATGGAAGCTATCACATTATATCTTAATCAAAGAAGTAGTTTGGCGTCGAACGATTTATCTATATTCTGCACTTGTGGCAGAAAATGCAGTAATAGCACTTTCTGCACCTGTGGCGGAAAACGCGATAATAGCACTCAGCATAATGTCAATTATTCTACCAAACATGCTGAAATAATTGATGCTCAGCAGAAAGAACTCGAGGAAATGAAATACATCTTGGAGGAGATAAAGCAGGAGGTAAAACAGATTCAATATCAATGGGACAAAGAACAAATCCGGCTCGAGAATCATATAAAGAGCCTTGAGGTGACATCCTCTTCCTACCACAAAGTTTTAGAGGAGAACCGCTTGCTTTACAATCAAGTACAAGACCTCAAAGGAGCCATTAGGGTCTATTGTAGAGTGAGACCATTCTTACCGGGGCAACAATCAAACGGACAATCGACAGTTGATTATATAGGAGAAGATGGAAATATAATGATTGTGAATCCCCTTAAGCAAGGAAAAGATGCGAGAAAGGTATTTTCGTTCAATAAGGTGTTCACAACAAATGCCACACAAGAACAAATATATGTCGATACTCAGCCATTGGTTAGATCTGTTTTAGATGGCTATAATGCTTGCATCTTTGCATATGGACAAACTGGCTCCGGGAAGACCTACACGATGAGTGGTCCAGATCTAATGACTGAAGAGACATGGGGCGTAAACTATAGAGCTTTGCGTGACCTATTTCATATATCAAAGGAAAGAGCAGATGCAATCAAATACGAAGTTAGCGTCCAGATGATTGAAATATACAATGAACAAGTTAGAGATTTATTAGTCAATATACGAAACAACTCTCAGTTGAATGGACTTAATGTGCCTGATGCATGTTTGGTTCCGGTTAGTTGTACTCAAGATGTTCTTGATTTAATGAAAATTGGTCAAAAGAACCGTGCCGTGGGTGCTACTGCTCTAAATGAACGAAGCAGCCGTTCTCATAGTGTGTTGACAATTCATGTAAGAGGAAGAGACTTAGTTTCTAATTCAGTTCTTAAGGGTTGTCTCCATCTCGTGGATTTGGCTGGAAGTGAGAGAGTGGAGAAATCTGAGGCTGTTGGAGAGAGACTAAAGGAGGCACAACATATTAATAAATCTCTTTCTGCACTTGGCGACGTTATCTCGGCTTTGGCGCAGAAGAGTCAACATATTCCTTACAGAAATAGCAAGCTTACACAAGTTTTACAAGATTCATTAGGTGGTCATGCAAAGACTTTGATGTTTGTTCACATAAATCCTGAACTCAATGCCTTTGGGGAGACAATTAGCACATTGAAGTTTGCTGAGAGGGTTGCATCTATTGAACTTGGAGCTGCTAAATCTAATAAAGAAACCGGTGAAATCCGAGAGCTAAAGGAAGAGATATCAAATATCAAATTGGCCTTGGAGAGAAAGGAAACTGAAATGGAGCAATTGAAATCTGGAAATGCACGGAATGCAACAGAATCTCAGAAATCAAGAGCTGTTTCACCTTTCCGTTTGCCCAAATATAGTACAAGTGGCGGCATGAAGCCTGAAATTGGTCAAAGATCCATTGATGATAGAAGCTCCGAGGCTAAAAATTATTCTTCGGGTAAGCAAAGAAGGTCGAGATTTCTCTCAACATACATGGACAAGGACTCCATACCGAGAATGTCTCTTCTTTCTGAAGAAAAGTCAGTTAGCTCAGGGAAGCACAATAGATCACCATCACCTCCAGTCAGAAGATCGATTTCCACGGATAGAGGTTCTGTCACTAAAAGCAAGACCAAAATTGACAACGTAGAAAACCAACCAATTTTGAAGCATCTAATTCCAGCTAGAGTACCTGTAAACAAATCTCTTGTCACAATGACACCATCTACAGAACATAACTCAAACGTCCATCTGCATTCACAAGAGGCGGTGAGGCACGGCAACATTTCTGAACCTGTCTATAATCTTCAGAAAGTAAGCCTTAGGAAAGTTCATCAAGAACATGAAGAGGAACAGTTCAAACAACCATTTGCAGTAGTAAAACAAATTGGTGTTAGGAAAAGCAAAGCTGATAATAATAATAAGGTCAAGGCCAGACATCTTCAACAATCTCCTTTTAGGATTCGGAAGACTGATGAAATCATAGAGCCGCCTCGAAAGCGTGATTACTCAGAACCAGAAAATGATTTTAGCTTTATGGAGTCTACAATCAATAGTGCATCAAATGTTCATAAGAAACGTCACGACATTTCAAGGAATTCTCAGAATCTTGAATCAAGATGTATTATGCAAGGAGCTGAACCATTGTCTTCTAGTAAAGTTGAAAACAAACTTTTAAGTGGTCGCAATTCATCCATGCATGAACTTAAAAGAAGCCGATCTACGCCACGAGGAAAGTTTTTTGTATTATAA 3360 0.3961 MPQDNSLLNSIFASTSKRILNLKSSVFNNSDVNDEINDHELAHRKAEEAALRRNEAAEWLREMDEVACLTLSKQPSEEEFCGALRNGLILCNVLNRVNPGAILKVVDNHVLEVDSLEGHAHSAIQYFENMKNFLDAVEDMTLLTFEASDLEKGGSSSKVVDCILCLKGYYEWKLSGGVGVWRYGGTVRITSFPKGTPSSNLGSESADESLEESQSSQYQQLLEFLHMFPEVSIEETKTASALAFLFDHFGLKLLQAFVRETDEADDLPLNAMVIDTFLNKIVRDFSALLASQGTQLAFFLKKILKGDNDCLSKREFMEAITLYLNQRSSLASNDLSIFCTCGRKCSNSTFCTCGGKRDNSTQHNVNYSTKHAEIIDAQQKELEEMKYILEEIKQEVKQIQYQWDKEQIRLENHIKSLEVTSSSYHKVLEENRLLYNQVQDLKGAIRVYCRVRPFLPGQQSNGQSTVDYIGEDGNIMIVNPLKQGKDARKVFSFNKVFTTNATQEQIYVDTQPLVRSVLDGYNACIFAYGQTGSGKTYTMSGPDLMTEETWGVNYRALRDLFHISKERADAIKYEVSVQMIEIYNEQVRDLLVNIRNNSQLNGLNVPDACLVPVSCTQDVLDLMKIGQKNRAVGATALNERSSRSHSVLTIHVRGRDLVSNSVLKGCLHLVDLAGSERVEKSEAVGERLKEAQHINKSLSALGDVISALAQKSQHIPYRNSKLTQVLQDSLGGHAKTLMFVHINPELNAFGETISTLKFAERVASIELGAAKSNKETGEIRELKEEISNIKLALERKETEMEQLKSGNARNATESQKSRAVSPFRLPKYSTSGGMKPEIGQRSIDDRSSEAKNYSSGKQRRSRFLSTYMDKDSIPRMSLLSEEKSVSSGKHNRSPSPPVRRSISTDRGSVTKSKTKIDNVENQPILKHLIPARVPVNKSLVTMTPSTEHNSNVHLHSQEAVRHGNISEPVYNLQKVSLRKVHQEHEEEQFKQPFAVVKQIGVRKSKADNNNKVKARHLQQSPFRIRKTDEIIEPPRKRDYSEPENDFSFMESTINSASNVHKKRHDISRNSQNLESRCIMQGAEPLSSSKVENKLLSGRNSSMHELKRSRSTPRGKFFVL 1119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03608 1119 ProSiteProfiles Kinesin motor domain profile. 444 765 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa1g03608 1119 Pfam Calponin homology (CH) domain 53 171 IPR001715 GO:0005515
Vifa1g03608 1119 Coils Coil 772 806 - -
Vifa1g03608 1119 Coils Coil 29 49 - -
Vifa1g03608 1119 MobiDBLite consensus disorder prediction 804 819 - -
Vifa1g03608 1119 FunFam kinesin-like protein KIN-14F 439 806 - -
Vifa1g03608 1119 Gene3D - 35 180 IPR036872 -
Vifa1g03608 1119 ProSiteProfiles Calponin homology (CH) domain profile. 50 171 IPR001715 GO:0005515
Vifa1g03608 1119 SMART ch_5 52 169 IPR001715 GO:0005515
Vifa1g03608 1119 SUPERFAMILY BAR/IMD domain-like 364 442 IPR027267 -
Vifa1g03608 1119 Coils Coil 375 402 - -
Vifa1g03608 1119 SMART kinesin_4 442 773 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa1g03608 1119 MobiDBLite consensus disorder prediction 1084 1119 - -
Vifa1g03608 1119 CDD CH_AtKIN14-like 52 167 - -
Vifa1g03608 1119 MobiDBLite consensus disorder prediction 1084 1099 - -
Vifa1g03608 1119 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 445 802 IPR027417 -
Vifa1g03608 1119 MobiDBLite consensus disorder prediction 880 915 - -
Vifa1g03608 1119 FunFam kinesin-like protein KIN-14F 42 171 - -
Vifa1g03608 1119 PANTHER KINESIN-LIKE PROTEIN KLP-3 57 891 IPR027640 GO:0003777|GO:0007018
Vifa1g03608 1119 Pfam Kinesin motor domain 450 765 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa1g03608 1119 PRINTS Kinesin heavy chain signature 715 736 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa1g03608 1119 PRINTS Kinesin heavy chain signature 520 541 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa1g03608 1119 PRINTS Kinesin heavy chain signature 666 684 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa1g03608 1119 PRINTS Kinesin heavy chain signature 635 652 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa1g03608 1119 MobiDBLite consensus disorder prediction 839 856 - -
Vifa1g03608 1119 CDD KISc_C_terminal 442 767 - -
Vifa1g03608 1119 Gene3D Kinesin motor domain 386 767 IPR036961 -
Vifa1g03608 1119 MobiDBLite consensus disorder prediction 800 868 - -
Vifa1g03608 1119 SUPERFAMILY Calponin-homology domain, CH-domain 44 194 IPR036872 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03608 Vifa-Chr1 557801293 557806340 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03608 380 782 Calmodulin-binding Proteins AT5G65930 39.667 1.98e-75 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03608 K10406 - gmx:100777378 1544.25