Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03607 ATGCCTCAGGATAATAGCTTATTAAACTCGATTTTCGCATCAACGTCCAAAAGGATATTGAATTTGAAGAGTTCAGTTTTTAATAACAGTGATGTGAATGATGAGATCAATGATCATGAATTGGCTCATAGAAAAGCAGAAGAAGCAGCGTTGAGGAGGAATGAGGCAGCGGAATGGCTAAGAGAAATGGATGAAGTGGCTTGTTTAACATTGAGTAAACAACCTTCTGAGGAAGAGTTCTGTGGTGCTCTTCGGAATGGGCTTATTCTTTGTAATGTTCTTAATAGAGTTAATCCGGGTGCTATTCTTAAGGTGGTGGATAATCATGTTCTTGAGGTTGATTCTTTGGAGGGACATGCACATTCTGCTATTCAGTATTTTGAAAACATGAAGAATTTTCTTGATGCTGTTGAGGATATGACTCTCTTGACCTTTGAAGCTTCTGATTTGGAAAAGGGCGGTTCATCAAGTAAAGTTGTGGACTGCATTCTGTGTTTGAAAGGGTATTATGAATGGAAGCTATCAGGTGGAGTTGGGGTTTGGAGGTATGGAGGAACTGTTAGGATTACTTCTTTCCCCAAAGGAACTCCTTCTTCCAATTTGGGCAGTGAAAGTGCTGATGAGTCCCTCGAGGAATCTCAATCCTCGCAGTATCAACAGTTGCTTGAATTTCTTCATATGTTTCCGGAGGTTTCAATTGAAGAAACCAAAACTGCGAGTGCTCTGGCTTTCCTGTTTGATCACTTTGGACTCAAACTTCTCCAGGCTTTCGTCAGAGAGACTGATGAAGCTGATGATCTACCACTCAATGCAATGGTAATTGATACATTTCTGAACAAGATAGTAAGGGATTTCTCCGCATTACTTGCTTCTCAAGGCACTCAGCTTGCATTTTTCCTCAAGAAAATATTGAAAGGAGATAATGACTGTCTTTCTAAGAGAGAATTCATGGAAGCTATCACATTATATCTTAATCAAAGAAGTAGTTTGGCGTCGAACGATTTATCTATATTCTGCACTTGTGGCAGAAAATGCAGTAATAGCACTTTCTGCACCTGTGGCGGAAAACGCGATAATAGCACTCAGCATAATGTCAATTATTCTACCAAACATGCTGAAATAATTGATGCTCAGCAGAAAGAACTCGAGGAAATGAAATACATCTTGGAGGAGATAAAGCAGGAGGTAAAACAGATTCAATATCAATGGGACAAAGAACAAATCCGGCTCGAGAATCATATAAAGAGCCTTGAGGTGACATCCTCTTCCTACCACAAAGTTTTAGAGGAGAACCGCTTGCTTTACAATCAAGTACAAGACCTCAAAGGAGCCATTAGGGTCTATTGTAGAGTGAGACCATTCTTACCGGGGCAACAATCAAACGGACAATCGACAGTTGATTATATAGGAGAAGATGGAAATATAATGATTGTGAATCCCCTTAAGCAAGGAAAAGATGCGAGAAAGGTATTTTCGTTCAATAAGGTGTTCACAACAAATGCCACACAAGAACAAATATATGTCGATACTCAGCCATTGGTTAGATCTGTTTTAGATGGCTATAATGCTTGCATCTTTGCATATGGACAAACTGGCTCCGGGAAGACCTACACGATGAGTGGTCCAGATCTAATGACTGAAGAGACATGGGGCGTAAACTATAGAGCTTTGCGTGACCTATTTCATATATCAAAGGAAAGAGCAGATGCAATCAAATACGAAGTTAGCGTCCAGATGATTGAAATATACAATGAACAATTGAATGGACTTAATGTGCCTGATGCATGTTTGGTTCCGGTTAGTTGTACTCAAGATGTTCTTGATTTAATGAAAATTGGTCAAAAGAACCGTGCCGTGGGTGCTACTGCTCTAAATGAACGAAGCAGCCGTTCTCATAGTGTGTTGACAATTCATGTAAGAGGAAGAGACTTAGTTTCTAATTCAGTTCTTAAGGGTTGTCTCCATCTCGTGGATTTGGCTGGAAGTGAGAGAGTGGAGAAATCTGAGGCTGTTGGAGAGAGACTAAAGGAGGCACAACATATTAATAAATCTCTTTCTGCACTTGGCGACGTTATCTCGGCTTTGGCGCAGAAGAGTCAACATATTCCTTACAGAAATAGCAAGCTTACACAAGTTTTACAAGATTCATTAGGTGGTCATGCAAAGACTTTGATGTTTGTTCACATAAATCCTGAACTCAATGCCTTTGGGGAGACAATTAGCACATTGAAGTTTGCTGAGAGGGTTGCATCTATTGAACTTGGAGCTGCTAAATCTAATAAAGAAACCGGTGAAATCCGAGAGCTAAAGGAAGAGATATCAAATATCAAATTGGCCTTGGAGAGAAAGGAAACTGAAATGGAGCAATTGAAATCTGGAAATGCACGGAATGCAACAGAATCTCAGAAATCAAGAGCTGTTTCACCTTTCCGTTTGCCCAAATATAGTACAAGTGGCGGCATGAAGCCTGAAATTGGTCAAAGATCCATTGATGATAGAAGCTCCGAGGCTAAAAATTATTCTTCGGGTAAGCAAAGAAGGTCGAGATTTCTCTCAACATACATGGACAAGGACTCCATACCGAGAATGTCTCTTCTTTCTGAAGAAAAGTCAGTTAGCTCAGGGAAGCACAATAGATCACCATCACCTCCAGTCAGAAGATCGATTTCCACGGATAGAGGTTCTGTCACTAAAAGCAAGACCAAAATTGACAACGTAGAAAACCAACCAATTTTGAAGCATCTAATTCCAGCTAGAGTACCTGTAAACAAATCTCTTGTCACAATGACACCATCTACAGAACATAACTCAAACGTCCATCTGCATTCACAAGAGGCGGTGAGGCACGGCAACATTTCTGAACCTGTCTATAATCTTCAGAAAGTAAGCCTTAGGAAAGTTCATCAAGAACATGAAGAGGAACAGTTCAAACAACCATTTGCAGTAGTAAAACAAATTGGTGTTAGGAAAAGCAAAGCTGATAATAATAATAAGGTCAAGGCCAGACATCTTCAACAATCTCCTTTTAGGATTCGGAAGACTGATGAAATCATAGAGCCGCCTCGAAAGCGTGATTACTCAGAACCAGAAAATGATTTTAGCTTTATGGAGTCTACAATCAATAGTGCATCAAATGTTCATAAGAAACGTCACGACATTTCAAGGAATTCTCAGAATCTTGAATCAAGATGTATTATGCAAGGAGCTGAACCATTGTCTTCTAGTAAAGTTGAAAACAAACTTTTAAGTGGTCGCAATTCATCCATGCATGAACTTAAAAGAAGCCGATCTACGCCACGAGGAAAGTTTTTTGTATTATAA 3321 0.3972 MPQDNSLLNSIFASTSKRILNLKSSVFNNSDVNDEINDHELAHRKAEEAALRRNEAAEWLREMDEVACLTLSKQPSEEEFCGALRNGLILCNVLNRVNPGAILKVVDNHVLEVDSLEGHAHSAIQYFENMKNFLDAVEDMTLLTFEASDLEKGGSSSKVVDCILCLKGYYEWKLSGGVGVWRYGGTVRITSFPKGTPSSNLGSESADESLEESQSSQYQQLLEFLHMFPEVSIEETKTASALAFLFDHFGLKLLQAFVRETDEADDLPLNAMVIDTFLNKIVRDFSALLASQGTQLAFFLKKILKGDNDCLSKREFMEAITLYLNQRSSLASNDLSIFCTCGRKCSNSTFCTCGGKRDNSTQHNVNYSTKHAEIIDAQQKELEEMKYILEEIKQEVKQIQYQWDKEQIRLENHIKSLEVTSSSYHKVLEENRLLYNQVQDLKGAIRVYCRVRPFLPGQQSNGQSTVDYIGEDGNIMIVNPLKQGKDARKVFSFNKVFTTNATQEQIYVDTQPLVRSVLDGYNACIFAYGQTGSGKTYTMSGPDLMTEETWGVNYRALRDLFHISKERADAIKYEVSVQMIEIYNEQLNGLNVPDACLVPVSCTQDVLDLMKIGQKNRAVGATALNERSSRSHSVLTIHVRGRDLVSNSVLKGCLHLVDLAGSERVEKSEAVGERLKEAQHINKSLSALGDVISALAQKSQHIPYRNSKLTQVLQDSLGGHAKTLMFVHINPELNAFGETISTLKFAERVASIELGAAKSNKETGEIRELKEEISNIKLALERKETEMEQLKSGNARNATESQKSRAVSPFRLPKYSTSGGMKPEIGQRSIDDRSSEAKNYSSGKQRRSRFLSTYMDKDSIPRMSLLSEEKSVSSGKHNRSPSPPVRRSISTDRGSVTKSKTKIDNVENQPILKHLIPARVPVNKSLVTMTPSTEHNSNVHLHSQEAVRHGNISEPVYNLQKVSLRKVHQEHEEEQFKQPFAVVKQIGVRKSKADNNNKVKARHLQQSPFRIRKTDEIIEPPRKRDYSEPENDFSFMESTINSASNVHKKRHDISRNSQNLESRCIMQGAEPLSSSKVENKLLSGRNSSMHELKRSRSTPRGKFFVL 1106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03607 1106 MobiDBLite consensus disorder prediction 791 806 - -
Vifa1g03607 1106 PRINTS Kinesin heavy chain signature 653 671 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa1g03607 1106 PRINTS Kinesin heavy chain signature 702 723 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa1g03607 1106 PRINTS Kinesin heavy chain signature 520 541 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa1g03607 1106 PRINTS Kinesin heavy chain signature 622 639 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa1g03607 1106 SUPERFAMILY Calponin-homology domain, CH-domain 44 194 IPR036872 -
Vifa1g03607 1106 Gene3D - 35 180 IPR036872 -
Vifa1g03607 1106 FunFam kinesin-like protein KIN-14F 439 793 - -
Vifa1g03607 1106 Coils Coil 29 49 - -
Vifa1g03607 1106 Coils Coil 759 793 - -
Vifa1g03607 1106 ProSiteProfiles Calponin homology (CH) domain profile. 50 171 IPR001715 GO:0005515
Vifa1g03607 1106 MobiDBLite consensus disorder prediction 1071 1106 - -
Vifa1g03607 1106 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 445 789 IPR027417 -
Vifa1g03607 1106 SMART ch_5 52 169 IPR001715 GO:0005515
Vifa1g03607 1106 MobiDBLite consensus disorder prediction 1071 1086 - -
Vifa1g03607 1106 ProSiteProfiles Kinesin motor domain profile. 444 752 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa1g03607 1106 SUPERFAMILY BAR/IMD domain-like 364 442 IPR027267 -
Vifa1g03607 1106 Coils Coil 375 402 - -
Vifa1g03607 1106 CDD CH_AtKIN14-like 52 167 - -
Vifa1g03607 1106 SMART kinesin_4 442 760 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa1g03607 1106 FunFam kinesin-like protein KIN-14F 42 171 - -
Vifa1g03607 1106 MobiDBLite consensus disorder prediction 826 843 - -
Vifa1g03607 1106 MobiDBLite consensus disorder prediction 867 902 - -
Vifa1g03607 1106 Gene3D Kinesin motor domain 386 754 IPR036961 -
Vifa1g03607 1106 Pfam Calponin homology (CH) domain 53 171 IPR001715 GO:0005515
Vifa1g03607 1106 MobiDBLite consensus disorder prediction 787 855 - -
Vifa1g03607 1106 PANTHER KINESIN-LIKE PROTEIN KLP-3 57 869 IPR027640 GO:0003777|GO:0007018
Vifa1g03607 1106 Pfam Kinesin motor domain 588 752 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03607 Vifa-Chr1 557801293 557806340 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03607 380 769 Calmodulin-binding Proteins AT5G65930 39.048 1.06e-73 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03607 K10406 - gmx:100777378 1516.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g03607 1 557801293 557806340 Vifa1g03607 1 557801293 557806340 PCT