Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03606 ATGCCTCAGGATAATAGCTTATTAAACTCGATTTTCGCATCAACGTCCAAAAGGATATTGAATTTGAAGAGTTCAGTTTTTAATAACAGTGATGTGAATGATGAGATCAATGATCATGAATTGGCTCATAGAAAAGCAGAAGAAGCAGCGTTGAGGAGGAATGAGGCAGCGGAATGGCTAAGAGAAATGGATGAAGTGGCTTGTTTAACATTGAGTAAACAACCTTCTGAGGAAGAGTTCTGTGGTGCTCTTCGGAATGGGCTTATTCTTTGTAATGTTCTTAATAGAGTTAATCCGGGTGCTATTCTTAAGGTGGTGGATAATCATGTTCTTGAGGTTGATTCTTTGGAGGGACATGCACATTCTGCTATTCAGTATTTTGAAAACATGAAGAATTTTCTTGATGCTGTTGAGGATATGACTCTCTTGACCTTTGAAGCTTCTGATTTGGAAAAGGGCGGTTCATCAAGTAAAGTTGTGGACTGCATTCTGTGTTTGAAAGGGTATTATGAATGGAAGCTATCAGGTGGAGTTGGGGTTTGGAGGTATGGAGGAACTGTTAGGATTACTTCTTTCCCCAAAGGAACTCCTTCTTCCAATTTGGGCAGTGAAAGTGCTGATGAGTCCCTCGAGGAATCTCAATCCTCGCAGTATCAACAGTTGCTTGAATTTCTTCATATGTTTCCGGAGGTTTCAATTGAAGAAACCAAAACTGCGAGTGCTCTGGCTTTCCTGTTTGATCACTTTGGACTCAAACTTCTCCAGGCTTTCGTCAGAGAGACTGATGAAGCTGATGATCTACCACTCAATGCAATGGTAATTGATACATTTCTGAACAAGATAGTAAGGGATTTCTCCGCATTACTTGCTTCTCAAGGCACTCAGCTTGCATTTTTCCTCAAGAAAATATTGAAAGGAGATAATGACTGTCTTTCTAAGAGAGAATTCATGGAAGCTATCACATTATATCTTAATCAAAGAAGTAGTTTGGCGTCGAACGATTTATCTATATTCTGCACTTGTGGCAGAAAATGCAGTAATAGCACTTTCTGCACCTGTGGCGGAAAACGCGATAATAGCACTCAGCATAATGTCAATTATTCTACCAAACATGCTGAAATAATTGATGCTCAGCAGAAAGAACTCGAGGAAATGAAATACATCTTGGAGGAGATAAAGCAGGAGGTAAAACAGATTCAATATCAATGGGACAAAGAACAAATCCGGCTCGAGAATCATATAAAGAGCCTTGAGGTGACATCCTCTTCCTACCACAAAGTTTTAGAGGAGAACCGCTTGCTTTACAATCAAGTACAAGACCTCAAAGGAGCCATTAGGGTCTATTGTAGAGTGAGACCATTCTTACCGGGGCAACAATCAAACGGACAATCGACAGTTGATTATATAGGAGAAGATGGAAATATAATGATTGTGAATCCCCTTAAGCAAGGAAAAGATGCGAGAAAGGTATTTTCGTTCAATAAGGTGTTCACAACAAATGCCACACAAGAACAAATATATGTCGATACTCAGCCATTGGTTAGATCTGTTTTAGATGGCTATAATGCTTGCATCTTTGCATATGGACAAACTGGCTCCGGGAAGACCTACACGATGAGTGGTCCAGATCTAATGACTGAAGAGACATGGGGCGTAAACTATAGAGCTTTGCGTGACCTATTTCATATATCAAAGGAAAGAGCAGATGCAATCAAATACGAAGTTAGCGTCCAGATGATTGAAATATACAATGAACAAGTTAGAGATTTATTAGTCAGTGATGGCTCTAACAGAAGATTAGATATACGAAACAACTCTCAGTTGAATGGACTTAATGTGCCTGATGCATGTTTGGTTCCGGTTAGTTGTACTCAAGATGTTCTTGATTTAATGAAAATTGGTCAAAAGAACCGTGCCGTGGGTGCTACTGCTCTAAATGAACGAAGCAGCCGTTCTCATAGTGTGTTGACAATTCATGTAAGAGGAAGAGACTTAGTTTCTAATTCAGTTCTTAAGGGTTGTCTCCATCTCGTGGATTTGGCTGGAAGTGAGAGAGTGGAGAAATCTGAGGCTGTTGGAGAGAGACTAAAGGAGGCACAACATATTAATAAATCTCTTTCTGCACTTGGCGACGTTATCTCGGCTTTGGCGCAGAAGAGTCAACATATTCCTTACAGAAATAGCAAGCTTACACAAGTTTTACAAGATTCATTAGGTGGTCATGCAAAGACTTTGATGTTTGTTCACATAAATCCTGAACTCAATGCCTTTGGGGAGACAATTAGCACATTGAAGTTTGCTGAGAGGGTTGCATCTATTGAACTTGGAGCTGCTAAATCTAATAAAGAAACCGGTGAAATCCGAGAGCTAAAGGAAGAGATATCAAATATCAAATTGGCCTTGGAGAGAAAGGAAACTGAAATGGAGCAATTGAAATCTGGAAATGCACGGAATGCAACAGAATCTCAGAAATCAAGAGCTGTTTCACCTTTCCGTTTGCCCAAATATAGTACAAGTGGCGGCATGAAGCCTGAAATTGGTCAAAGATCCATTGATGATAGAAGCTCCGAGGCTAAAAATTATTCTTCGGGTAAGCAAAGAAGGTCGAGATTTCTCTCAACATACATGGACAAGGACTCCATACCGAGAATGTCTCTTCTTTCTGAAGAAAAGTCAGTTAGCTCAGGGAAGCACAATAGATCACCATCACCTCCAGTCAGAAGATCGATTTCCACGGATAGAGGTTCTGTCACTAAAAGCAAGACCAAAATTGACAACGTAGAAAACCAACCAATTTTGAAGCATCTAATTCCAGCTAGAGTACCTGTAAACAAATCTCTTGTCACAATGACACCATCTACAGAACATAACTCAAACGTCCATCTGCATTCACAAGAGGCGGTGAGGCACGGCAACATTTCTGAACCTGTCTATAATCTTCAGAAAGTAAGCCTTAGGAAAGTTCATCAAGAACATGAAGAGGAACAGTTCAAACAACCATTTGCAGTAGTAAAACAAATTGGTGTTAGGAAAAGCAAAGCTGATAATAATAATAAGGTCAAGGCCAGACATCTTCAACAATCTCCTTTTAGGATTCGGAAGACTGATGAAATCATAGAGCCGCCTCGAAAGCGTGATTACTCAGAACCAGAAAATGATTTTAGCTTTATGGAGTCTACAATCAATAGTGCATCAAATGTTCATAAGAAACGTCACGACATTTCAAGGAATTCTCAGAATCTTGAATCAAGATGTATTATGCAAGGAGCTGAACCATTGTCTTCTAGTAAAGTTGAAAACAAACTTTTAAGTGGTCGCAATTCATCCATGCATGAACTTAAAAGAAGCCGATCTACGCCACGAGGAAAGTTTTTTGTATTATAA 3384 0.3963 MPQDNSLLNSIFASTSKRILNLKSSVFNNSDVNDEINDHELAHRKAEEAALRRNEAAEWLREMDEVACLTLSKQPSEEEFCGALRNGLILCNVLNRVNPGAILKVVDNHVLEVDSLEGHAHSAIQYFENMKNFLDAVEDMTLLTFEASDLEKGGSSSKVVDCILCLKGYYEWKLSGGVGVWRYGGTVRITSFPKGTPSSNLGSESADESLEESQSSQYQQLLEFLHMFPEVSIEETKTASALAFLFDHFGLKLLQAFVRETDEADDLPLNAMVIDTFLNKIVRDFSALLASQGTQLAFFLKKILKGDNDCLSKREFMEAITLYLNQRSSLASNDLSIFCTCGRKCSNSTFCTCGGKRDNSTQHNVNYSTKHAEIIDAQQKELEEMKYILEEIKQEVKQIQYQWDKEQIRLENHIKSLEVTSSSYHKVLEENRLLYNQVQDLKGAIRVYCRVRPFLPGQQSNGQSTVDYIGEDGNIMIVNPLKQGKDARKVFSFNKVFTTNATQEQIYVDTQPLVRSVLDGYNACIFAYGQTGSGKTYTMSGPDLMTEETWGVNYRALRDLFHISKERADAIKYEVSVQMIEIYNEQVRDLLVSDGSNRRLDIRNNSQLNGLNVPDACLVPVSCTQDVLDLMKIGQKNRAVGATALNERSSRSHSVLTIHVRGRDLVSNSVLKGCLHLVDLAGSERVEKSEAVGERLKEAQHINKSLSALGDVISALAQKSQHIPYRNSKLTQVLQDSLGGHAKTLMFVHINPELNAFGETISTLKFAERVASIELGAAKSNKETGEIRELKEEISNIKLALERKETEMEQLKSGNARNATESQKSRAVSPFRLPKYSTSGGMKPEIGQRSIDDRSSEAKNYSSGKQRRSRFLSTYMDKDSIPRMSLLSEEKSVSSGKHNRSPSPPVRRSISTDRGSVTKSKTKIDNVENQPILKHLIPARVPVNKSLVTMTPSTEHNSNVHLHSQEAVRHGNISEPVYNLQKVSLRKVHQEHEEEQFKQPFAVVKQIGVRKSKADNNNKVKARHLQQSPFRIRKTDEIIEPPRKRDYSEPENDFSFMESTINSASNVHKKRHDISRNSQNLESRCIMQGAEPLSSSKVENKLLSGRNSSMHELKRSRSTPRGKFFVL 1127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03606 1127 Pfam Kinesin motor domain 450 773 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa1g03606 1127 Coils Coil 780 814 - -
Vifa1g03606 1127 Coils Coil 29 49 - -
Vifa1g03606 1127 MobiDBLite consensus disorder prediction 812 827 - -
Vifa1g03606 1127 PRINTS Kinesin heavy chain signature 643 660 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa1g03606 1127 PRINTS Kinesin heavy chain signature 520 541 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa1g03606 1127 PRINTS Kinesin heavy chain signature 723 744 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa1g03606 1127 PRINTS Kinesin heavy chain signature 674 692 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa1g03606 1127 PANTHER KINESIN-LIKE PROTEIN KLP-3 57 899 IPR027640 GO:0003777|GO:0007018
Vifa1g03606 1127 FunFam kinesin-like protein KIN-14F 439 814 - -
Vifa1g03606 1127 Gene3D - 35 180 IPR036872 -
Vifa1g03606 1127 ProSiteProfiles Calponin homology (CH) domain profile. 50 171 IPR001715 GO:0005515
Vifa1g03606 1127 FunFam kinesin-like protein KIN-14F 42 171 - -
Vifa1g03606 1127 SMART ch_5 52 169 IPR001715 GO:0005515
Vifa1g03606 1127 Pfam Calponin homology (CH) domain 53 171 IPR001715 GO:0005515
Vifa1g03606 1127 SUPERFAMILY BAR/IMD domain-like 364 442 IPR027267 -
Vifa1g03606 1127 Coils Coil 375 402 - -
Vifa1g03606 1127 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 445 810 IPR027417 -
Vifa1g03606 1127 MobiDBLite consensus disorder prediction 1092 1127 - -
Vifa1g03606 1127 CDD CH_AtKIN14-like 52 167 - -
Vifa1g03606 1127 Gene3D Kinesin motor domain 386 775 IPR036961 -
Vifa1g03606 1127 MobiDBLite consensus disorder prediction 1092 1107 - -
Vifa1g03606 1127 SMART kinesin_4 442 781 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa1g03606 1127 CDD KISc_C_terminal 442 775 - -
Vifa1g03606 1127 MobiDBLite consensus disorder prediction 888 923 - -
Vifa1g03606 1127 MobiDBLite consensus disorder prediction 847 864 - -
Vifa1g03606 1127 ProSiteProfiles Kinesin motor domain profile. 444 773 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa1g03606 1127 MobiDBLite consensus disorder prediction 808 876 - -
Vifa1g03606 1127 SUPERFAMILY Calponin-homology domain, CH-domain 44 194 IPR036872 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03606 Vifa-Chr1 557801293 557806340 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03606 380 790 Calmodulin-binding Proteins AT5G65930 40.143 7.78e-78 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03606 K10406 - gmx:100777378 1568.9