Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03603 ATGAAGTTCAATCCAAGGGTTTCCAGCAGCCGCCGCAAGAGCCGCAAGGCCCACTTCACCGCCCCATCAAGCGTCCGCCGTGTCCTAATGAGTGCTCCACTCTCCGGCGACCTTCGATCCAAATACAACGTCCGCTCCTTACCGGTTCGCAAGGACGATGAAGTTCAGGTGGTTAGAGGAACATTCAAAGGCCGTGAAGGAAAGATTGTTCAGGTTTATCGCAAAAAGTGGGTGATTCACATCGAGCGCATAACTCGTGAGAAAGTTAACGGTTCAACTGTTAACGTTGGGTTGGATCCTTCTAAGGTGGTTATCACGAAACTCCGTTTGGATAAGGATCGGAAGAGTTTGATTGATAGGAAGGCCAAGGGGCGCGCTGCGGCGGATAAGGAGAAGGGGACTAAGTTTGCTCCTGAAGATATCATGCAAACCATTGATTAG 441 0.5034 MKFNPRVSSSRRKSRKAHFTAPSSVRRVLMSAPLSGDLRSKYNVRSLPVRKDDEVQVVRGTFKGREGKIVQVYRKKWVIHIERITREKVNGSTVNVGLDPSKVVITKLRLDKDRKSLIDRKAKGRAAADKEKGTKFAPEDIMQTID 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03603 146 CDD KOW_RPL26 52 105 IPR041988 GO:0003723
Vifa1g03603 146 Hamap 50S ribosomal protein L24 [rplX]. 9 121 IPR005756 GO:0003735|GO:0006412|GO:0015934
Vifa1g03603 146 MobiDBLite consensus disorder prediction 1 20 - -
Vifa1g03603 146 NCBIfam 50S ribosomal protein L24 8 122 IPR005756 GO:0003735|GO:0006412|GO:0015934
Vifa1g03603 146 PANTHER 60S RIBOSOMAL PROTEIN L26 FAMILY MEMBER 1 141 IPR005756 GO:0003735|GO:0006412|GO:0015934
Vifa1g03603 146 Pfam Ribosomal proteins L26 eukaryotic, L24P archaeal 8 121 IPR005756 GO:0003735|GO:0006412|GO:0015934
Vifa1g03603 146 FunFam 60S ribosomal protein L26 1 144 - -
Vifa1g03603 146 Gene3D - 1 143 IPR014722 -
Vifa1g03603 146 SUPERFAMILY Translation proteins SH3-like domain 8 125 IPR008991 -
Vifa1g03603 146 ProSitePatterns Ribosomal protein L24 signature. 52 69 IPR005825 GO:0003735|GO:0005840|GO:0006412
Vifa1g03603 146 SMART kow_9 48 75 IPR005824 -
Vifa1g03603 146 Pfam KOW motif 51 82 IPR005824 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03603 Vifa-Chr1 557775259 557775699 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03603 1 146 Cytoplasmic Ribosomal Protein Gene Family AT5G67510 83.562 9.64e-91 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03603 K02898 - gmx:100819391 251.906