Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03602 ATGTCTGCAAACTCAAAGAATATGTCACTTTTTCTTCTCTTAATAAAGTTTGTTTTCTTTTCATGTTGTAACTCTCTTCTTGATGAACAAGGCCAAGCTCTTCTAGCATGGAAGAAGAGTTTAAACACGAATTCGAATGCATTACTACCTTCTTGGAATGTTTCGAACCAAACACCGTGCAACTGGTTCGGTGTGAAGTGCAATTTACAAGGAGAGGTAGAGGAGATAAACTTGAAGTCATTGAACTTGCAAGGCTCGTCATTGCCTTCGAATTTTCAACCTCTCAAGTCGTTGAAGGTTCTTGTCCTCTCGTCGATGAACCTCACGGGAAGGATTCCGAAAGAATTTGGAGAATATCAAGAGCTTGTTTTCATTGATCTTAGTGAAAATTCTCTCTTTGGTGAAATCCCAGAAGAAGTTTGCAGGCTAAGCAAGCTTCAAAACTTAGCTCTTCATGCAAACTCTCTTGAAGAAAATATTCCATTCCACATAGGAAATTTATCGAGTCTCGTGAACTTGACACTCTTCGACAATAAACTCTGTGGCGAAATTCCAAAGAGTATTGGCTTGTTGAGTAAGCTTCAAGTATTCAGAGCAGGAGGGAATAAGAACCTCAACGGTGAGATTCCATCGGAGATCGGGAACTGCAGCGACTTGGTCGTGTTAGGCCTCGCGGAAACCAGCATTTCCGGTAGTATTCCTTCATCAATAGGGATGCTGAAAAAACTACAGACCGTAGCCATTTACACAACTAAGCTATCAGGCTCTATACCAGAAGAGATAGGAAATTGCAGTGAGTTGCAGAATCTGTATTTGTACGAAAACTCAATTTCCGGTTCAATTCCACGTCAAATAGGAGAGCTCGGAAAGCTTCAGAGTCTACTTTTATGGAAAAACAATATAGTAGGGATGATTCCGGAAGAGCTTGGAAGATGCAAAGATCTCAGTGTTATAGATTTGTCAGAGAATCTTCTCACAGGTAGCATTCCAATCAGTTTCGGAAAGCTATCGAATCTTCAAGCACTTCAGCTGAGTGCTAATCGGTTGTCGGGTATTATACCACCCGAGATTTCAAGCTGCGCGTCTCTGACTCAGCTTGAAGTTGACAACAATACTCTTTCTGGTGAGATTCCTTCTGTTATTGGAAAATTGAGAAGCTTGACACTTTTCTTTGCATGGAAGAATAAGCTAACAGGAAAAATTCCAAATAGTCTTTCCCAGTGCGAAAATCTTCAGGCACTTGATCTTTCATATAACAACTTAACTGGTACAATACCAAAACAGCTTTTTCTGTTGAAAAATCTCACTCAACTTATGCTTCTTTCCAATGATTTGGAAGGATTCATACCACCTGATATAGGTAACTGCACGAGTCTTCGCAGGTTGAGGCTAAATCAGAATAGACTTGTTGGTATTATTCCGTTCGAGATAGCTAACTTGAAGAGTTTGAAATTTTTGGACTTGAACAACAATCATCTTGTAGGGGAGATTCCTTCAACAATATCAAGATGTCGAAATCTTGAGTTTATTGATCTCTCACACAACAAGCTCTTGGGCAATTTAGACGCTGTTTCTAATCTTCAGAGTCTTGTTTCTTTAAATGTTTCCTTCAATGAATTCTCTGGTGAATTGCCTAACACGCCGTTCTTCAGAAAACTCCCTCTCAGTGATCTCACTGGAAATAACATATCAAAAGTCAAAGATGATACCAGATTAGCTATGAAGATTATATTGTTCATGTTGTTAAGCACAAGTGCAGTACTTACACTTTTCCTAATCCACGTCGCGGTTCGTGCTTGTATTGCTAACGATGTAAATAACGGTTGGCTGATGACTTTGTACGACGACCATTATTGCTCTGCCGACGACGACATTGTCAAGAATTTAAAACCATCCAATGTGATTGACACTGGAAGCTGTGGAGTTTCGTACAAGGTGAAAACTCCAAAAGGCCAAATTTTAGCAGTTAAAAAGACGTTGCCATCAACAGATTCTGAAGCACTTATATCGGAAATTGATATGCTATGTTCAATCAAACACAAGAATATCACCAGGCTTCTTGGTTGGGGATCGAATTTTCTGAGTACTAAGAATATGATGGTGCAGTTTTATGAATACCTCCCTAGTTTGAGCTCAGTGCTTCATGGTTCAGAAAAGGGAAAGTTAGATTGGGATACCAGATATGAAATCATCTTAGGTTTGGCTCAAGCACTTTCATATTTGCACCATGATTGTGTGCCTTCTATGTTGCATGCAGATGTCAAAGCAACAAATGTGTTATTAGGCCCTGGATATCATCCATACCTTACTTGCTTTGGCCTAGTAAAAATCGCAAGTGAAAAAGTCGACGATGCTAAATCCAATCCAGTTCAAAGACCTGCCCACACAGGCAGCTCCCGCGGATACATAGATCCTGAGCTCAACTCAACACAGAAGATCAATGAGAAAATCGACGTGTACAGTTTCGGCGTGGTGATACTCGAGATACTGACAGGAAGGCATCCATTAGATCCAACTCTGCCAGAAGGTATACACTTGGTTCAATGGGCTAAGAATCACTTGGCTAGCAAAAAAGATCCATTTGAAATTCTTGACTCGAAGCTGAGAGGAAGGACTAAACCTACTACTATGCATGAAATACTCCAAACTCTGGCTGTGTCGATTTTATGTGTCAATACGAAAGCTCATGAACGGCCAACAATGAAGGATACTCTCGCAATGCTCAATCAATTTCGATATTTTGTTTAA 2748 0.401 MSANSKNMSLFLLLIKFVFFSCCNSLLDEQGQALLAWKKSLNTNSNALLPSWNVSNQTPCNWFGVKCNLQGEVEEINLKSLNLQGSSLPSNFQPLKSLKVLVLSSMNLTGRIPKEFGEYQELVFIDLSENSLFGEIPEEVCRLSKLQNLALHANSLEENIPFHIGNLSSLVNLTLFDNKLCGEIPKSIGLLSKLQVFRAGGNKNLNGEIPSEIGNCSDLVVLGLAETSISGSIPSSIGMLKKLQTVAIYTTKLSGSIPEEIGNCSELQNLYLYENSISGSIPRQIGELGKLQSLLLWKNNIVGMIPEELGRCKDLSVIDLSENLLTGSIPISFGKLSNLQALQLSANRLSGIIPPEISSCASLTQLEVDNNTLSGEIPSVIGKLRSLTLFFAWKNKLTGKIPNSLSQCENLQALDLSYNNLTGTIPKQLFLLKNLTQLMLLSNDLEGFIPPDIGNCTSLRRLRLNQNRLVGIIPFEIANLKSLKFLDLNNNHLVGEIPSTISRCRNLEFIDLSHNKLLGNLDAVSNLQSLVSLNVSFNEFSGELPNTPFFRKLPLSDLTGNNISKVKDDTRLAMKIILFMLLSTSAVLTLFLIHVAVRACIANDVNNGWLMTLYDDHYCSADDDIVKNLKPSNVIDTGSCGVSYKVKTPKGQILAVKKTLPSTDSEALISEIDMLCSIKHKNITRLLGWGSNFLSTKNMMVQFYEYLPSLSSVLHGSEKGKLDWDTRYEIILGLAQALSYLHHDCVPSMLHADVKATNVLLGPGYHPYLTCFGLVKIASEKVDDAKSNPVQRPAHTGSSRGYIDPELNSTQKINEKIDVYSFGVVILEILTGRHPLDPTLPEGIHLVQWAKNHLASKKDPFEILDSKLRGRTKPTTMHEILQTLAVSILCVNTKAHERPTMKDTLAMLNQFRYFV 915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03602 915 Gene3D Ribonuclease Inhibitor 386 568 IPR032675 -
Vifa1g03602 915 ProSiteProfiles Leucine-rich repeat profile. 410 432 IPR001611 GO:0005515
Vifa1g03602 915 MobiDBLite consensus disorder prediction 785 805 - -
Vifa1g03602 915 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 427 521 - -
Vifa1g03602 915 FunFam Leucine-rich receptor-like protein kinase family protein 27 190 - -
Vifa1g03602 915 SUPERFAMILY Protein kinase-like (PK-like) 624 908 IPR011009 -
Vifa1g03602 915 SUPERFAMILY L domain-like 30 306 - -
Vifa1g03602 915 Pfam Leucine rich repeat N-terminal domain 28 68 IPR013210 -
Vifa1g03602 915 Pfam Protein kinase domain 635 905 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g03602 915 PRINTS Leucine-rich repeat signature 411 424 - -
Vifa1g03602 915 PRINTS Leucine-rich repeat signature 480 493 - -
Vifa1g03602 915 SMART LRR_typ_2 480 504 IPR003591 -
Vifa1g03602 915 SMART LRR_typ_2 288 312 IPR003591 -
Vifa1g03602 915 SMART LRR_typ_2 408 432 IPR003591 -
Vifa1g03602 915 SMART LRR_typ_2 336 360 IPR003591 -
Vifa1g03602 915 SMART LRR_typ_2 143 167 IPR003591 -
Vifa1g03602 915 Gene3D Phosphorylase Kinase; domain 1 623 706 - -
Vifa1g03602 915 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 203 426 - -
Vifa1g03602 915 SUPERFAMILY L domain-like 259 574 - -
Vifa1g03602 915 Gene3D Transferase(Phosphotransferase) domain 1 708 913 - -
Vifa1g03602 915 PANTHER LEUCINE RICH REPEAT KINASE 2 203 910 - -
Vifa1g03602 915 Pfam Leucine rich repeat 290 349 IPR001611 GO:0005515
Vifa1g03602 915 Pfam Leucine rich repeat 458 517 IPR001611 GO:0005515
Vifa1g03602 915 ProSiteProfiles Protein kinase domain profile. 629 912 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g03602 915 Gene3D Ribonuclease Inhibitor 281 382 IPR032675 -
Vifa1g03602 915 Gene3D Ribonuclease Inhibitor 27 183 IPR032675 -
Vifa1g03602 915 SMART serkin_6 629 914 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g03602 915 Gene3D Ribonuclease Inhibitor 184 280 IPR032675 -
Vifa1g03602 915 ProSitePatterns Serine/Threonine protein kinases active-site signature. 749 761 IPR008271 GO:0004672|GO:0006468
Vifa1g03602 915 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 707 913 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03602 Vifa-Chr1 557770709 557773557 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03602 27 914 Receptor kinase-like Gene Family AT4G26540 46.169 0.0 795
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vifa1g03602 Pkinase 3.4e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03602 - - cam:101492613 1310.43