Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03596 ATGGAGTATCATAGTGGAGGAAGTGGGTCCCCTGGTGATCATCATCATCATCACCATGATGGTTCTTCTGAATCTCAGAGGAGAAAGAAACGTTATCATCGTCACACTGCTAATCAGATTCAAAGGCTTGAATCGATGTTCAAGGATTGTCCACATCCTGATGAAAAACAAAGGTTGCAGTTAAGCAGAGAATTAGCCTTGGCTCCTAGACAAATCAAGTTTTGGTTTCAGAACAGAAGGACTCAGATGAAGGCACAACATGAAAGAGCTGATAATTGTACACTAAGGGCAGAGAATGATAAAATAAGATGTGAGAATATAGCAATAAGGGAAGCCCTTAAAAATGTCATCTGCCCCTCTTGTGGTGGTCCTCCAATCAATGATGATTGTTATTTTGATGAACAAAAATTGAGAATTGAAAATGCTCAACTCAAAGAAGAGCTTGATAGAGTATCTAGCATTGCTGCAAAATACATTGGAAGACCAATTTCACAGCTTCCACCAGTTTCACCAATTCACATGTCATCATTGGATTTATCAATGGGAAATTTTGGTGGACAAGGAATGGTTGGAGGACCTTCACTTGATCTTGATCTTCTACCAGGAAGTTCATCAAACATGCCAATGGTTCCTTACCAACCTGCTTGTCTTTCTGATCTCGAAAGGTCACACATGTCTGACCTTGCTACAAGTGCCATGGATGAACTCGTTAGGCTTTTGCAGGCGGATGATCCTTTGTGGATGAAATCAAACACTGACGGAAAAGTTGTTCTTAATCTTGATGCCTACGATATGATGTTCGATAAGACTGGTAATCGGTTGAAGAATCCGAATATTCGGATTGAAGCTTCTAGGGATTCTGGTGTTGTTATCATGAATAGTTTAACTCTGGTTGAAATGTTTATGGATCCAAACAAGTGGATGGAGCTTTTTCCTACTATTGTGACAATGGCGAAGACAATTGAAAATATTGCTCCTGGAATGATGGGTGGACATAGTGGTTCTTTGCAATTGATGTATGAAGAGTTGCAAGTGCTTTCACCATTTGTACCTATTAGAGAATTCTACTTTCTGCGCCACTGTCAACAAATTGAGCAAGGTTTATGGGCTATAGTTGATGTTTCATATGATTTTCCTAATGACAACCAATTCGGTTCACAATTTCGATGCCATCATCTTCCGTCTGGTTGCTTCATTCGAGACATGCCTAATGGATATTCGAAAGTTACTTGGATTGAACATGTTGAGATTGAAGATAAAACTCCAGTTCATCGGCTTTATAAAAATGTCATCTATAGTGGAGTTGCATTCGGTGCTGAAAGATGGCTCACTACACTTCAAAGAATGTGTGAAAGACTTGCTTGTCTCATGGTGTCTGCGAATTCTACCCGCGACCTTGGCGGAGTGATTCCTTCACCTGAGGGAAAGAGGAGTATGATGAAACTGGCACAAAGGATGGTAACAAATTTCTGTGCAAGTATAAGTGCATCAGCAAGTCATAGATGGACCACACTTTCAGCTTCTAATGAGATTGGAGTCAGAGTTACTGTGCGAAAGAGTACCGATCCTGGTCAGCCAAATGGTATTGTGCTGAGTGCAGCTACAACCATTTGGTTACCTCTTCCTCCACAACATGTTTTCAATTTCTTCAAAGATGAAAGGAAAAGATCTCAGTGGGATGTTCTTTCCCATGGTAATGCTGTTGTTCAAGAAGTTGCTCATATAGCAAATGGTTCACACCCTGGTAACTGCATTTCTGTTCTTAGGGCTTATAACACAAGTCAAAACAACATGTTGATACTTCAAGAAAGCTGTGTGGACTCATCAGGTTCACTAGTAGTCTATTGTCCGGTCGATTTACCAGCTATCAACATAGCAATGAGCGGTGAGGACCCGTCCTACATTCCATTACTCCCGTCCGGTTTCACAATTACATCCGACGGAAACCAAAGTGACAACACCAACAACAATAATAATAATAATAATAATAACAATATTCAAGGAGGAAGTGGTAGTAATAATGGCGACGGAGCATCGACAAGCTCGAACACAAACATGGGAAATAATAGCGGAGGATCATTGATCACAGTTGCGTTTCAAATAATGGTAAGCAGTTTACCATCTGCAAAACTTAACATGGAGTCTGTTACAACTGTGAATAACCTTATTAGTGAGACAGTCCAACACATAAAAGCTGCTTTGAATTGCCCTAGTTCTTGA 2220 0.4036 MEYHSGGSGSPGDHHHHHHDGSSESQRRKKRYHRHTANQIQRLESMFKDCPHPDEKQRLQLSRELALAPRQIKFWFQNRRTQMKAQHERADNCTLRAENDKIRCENIAIREALKNVICPSCGGPPINDDCYFDEQKLRIENAQLKEELDRVSSIAAKYIGRPISQLPPVSPIHMSSLDLSMGNFGGQGMVGGPSLDLDLLPGSSSNMPMVPYQPACLSDLERSHMSDLATSAMDELVRLLQADDPLWMKSNTDGKVVLNLDAYDMMFDKTGNRLKNPNIRIEASRDSGVVIMNSLTLVEMFMDPNKWMELFPTIVTMAKTIENIAPGMMGGHSGSLQLMYEELQVLSPFVPIREFYFLRHCQQIEQGLWAIVDVSYDFPNDNQFGSQFRCHHLPSGCFIRDMPNGYSKVTWIEHVEIEDKTPVHRLYKNVIYSGVAFGAERWLTTLQRMCERLACLMVSANSTRDLGGVIPSPEGKRSMMKLAQRMVTNFCASISASASHRWTTLSASNEIGVRVTVRKSTDPGQPNGIVLSAATTIWLPLPPQHVFNFFKDERKRSQWDVLSHGNAVVQEVAHIANGSHPGNCISVLRAYNTSQNNMLILQESCVDSSGSLVVYCPVDLPAINIAMSGEDPSYIPLLPSGFTITSDGNQSDNTNNNNNNNNNNNIQGGSGSNNGDGASTSSNTNMGNNSGGSLITVAFQIMVSSLPSAKLNMESVTTVNNLISETVQHIKAALNCPSS 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03596 739 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 26 735 IPR042160 -
Vifa1g03596 739 SUPERFAMILY Homeodomain-like 6 86 IPR009057 -
Vifa1g03596 739 SUPERFAMILY Bet v1-like 220 453 - -
Vifa1g03596 739 CDD homeodomain 28 87 IPR001356 GO:0003677
Vifa1g03596 739 FunFam Homeobox-leucine zipper protein HDG1 15 102 - -
Vifa1g03596 739 Pfam Homeodomain 29 84 IPR001356 GO:0003677
Vifa1g03596 739 ProSiteProfiles START domain profile. 218 455 IPR002913 GO:0008289
Vifa1g03596 739 Gene3D - 226 452 IPR023393 -
Vifa1g03596 739 ProSiteProfiles 'Homeobox' domain profile. 26 86 IPR001356 GO:0003677
Vifa1g03596 739 SMART HOX_1 27 90 IPR001356 GO:0003677
Vifa1g03596 739 Pfam START domain 228 452 IPR002913 GO:0008289
Vifa1g03596 739 FunFam Homeobox-leucine zipper protein GLABRA 2 227 451 - -
Vifa1g03596 739 MobiDBLite consensus disorder prediction 21 36 - -
Vifa1g03596 739 SMART START_1 227 452 IPR002913 GO:0008289
Vifa1g03596 739 MobiDBLite consensus disorder prediction 1 36 - -
Vifa1g03596 739 SUPERFAMILY Bet v1-like 473 731 - -
Vifa1g03596 739 Gene3D - 13 100 - -
Vifa1g03596 739 MobiDBLite consensus disorder prediction 646 687 - -
Vifa1g03596 739 Coils Coil 134 154 - -
Vifa1g03596 739 CDD START_ArGLABRA2_like 222 451 - -
Vifa1g03596 739 ProSitePatterns 'Homeobox' domain signature. 61 84 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03596 Vifa-Chr1 555559281 555563061 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03596 24 739 Homeobox Transcription Factor Family AT1G73360 63.586 0.0 900
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vifa1g03596 START 3.7e-49 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03596 K09338 - gmx:100809075 1165.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g03596 1 555559281 555563061 Vifa1g03596 1 555559281 555563061 ECH