Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03590 ATGTTTGTGAGGTGTTTGTTGAATTCCAACAGCATGGTTCAATCTTCAAATTCTGCATCAGAAGAAGAAAGAGTGGATGGTTCTAGAAATAGTCATAGGCATGATCATGTCTCGTTGCCGATGCCGCCTTCGTTTTCGGTTCGGATGGCTATGAGAATATCTAGATCAAGATGGTTTACTTTTTTGAGAAGAGTTTTCCATTACCAAAATGGGTCGAGGTCTAGTCTTGGCTCGAATCCTTTCAATTCCTGTACTTGGTTGATGTTGGAGTTCAGTGCTTTGATTGTTCAAATAATCGTTTCTACGTTCACTTTGGCTGTTTCGAATATGGAGAAACCTGTTTGGCCTATGAGGGTATGGATATCTGGTTATGATATTGGATGTGTTTTAAATTTGCTTGTAGTTTATGGACGGTACCGGCAAATTTATCTGATTCAAGGAGATGCTGTAAGCCTCTCTAATATGGAACAACAGAGAAACAGTGAAGACACAAGGACTTCACTGGAGCTTTTCTTTGCCATATGGTTTGTGATGGGAAATGTTTGGGTTTTCGACTCACGTTTCGGTTCATTTCAACAAGCTCCAAAACTTCATGTCCTCTGCATCACCTTGCTTACATGGAATGCAATCTGTTACTCTTTCCCTTTCCTTCTTTTTCTTTTGTTATGCTGCTGCGTGCCACTGATTAGCTCCCTCCTCGGTTACAACATGAATATGGCATCTTCTAATAAAGGAGCATCCGAAGAACAAATTTCTCAACTTCCAAGTTGGATACATAGAGATCCTCATACCACCAAGTTAGATCTTGGAAACGACTCTGAAAGCATTGAAAATTTTATCAATGAAGATCCGGAATGTTGCATTTGCTTAGCCAAGTACAAAGACAAAGAAGAAGTTAGAAAATTGCCATGTTCTCATGTGTTCCATCTAAAATGTGTGGACCAGTGGCTGAAAATTATATCTTGCTGCCCACTTTGCAAACAAGGATTAGAGAGATAG 999 0.3974 MFVRCLLNSNSMVQSSNSASEEERVDGSRNSHRHDHVSLPMPPSFSVRMAMRISRSRWFTFLRRVFHYQNGSRSSLGSNPFNSCTWLMLEFSALIVQIIVSTFTLAVSNMEKPVWPMRVWISGYDIGCVLNLLVVYGRYRQIYLIQGDAVSLSNMEQQRNSEDTRTSLELFFAIWFVMGNVWVFDSRFGSFQQAPKLHVLCITLLTWNAICYSFPFLLFLLLCCCVPLISSLLGYNMNMASSNKGASEEQISQLPSWIHRDPHTTKLDLGNDSESIENFINEDPECCICLAKYKDKEEVRKLPCSHVFHLKCVDQWLKIISCCPLCKQGLER 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03590 332 SUPERFAMILY RING/U-box 278 330 - -
Vifa1g03590 332 MobiDBLite consensus disorder prediction 8 37 - -
Vifa1g03590 332 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 234 331 IPR013083 -
Vifa1g03590 332 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 19 329 - -
Vifa1g03590 332 SMART ring_2 286 326 IPR001841 -
Vifa1g03590 332 Pfam RING-like zinc finger 285 313 IPR001841 -
Vifa1g03590 332 ProSiteProfiles Zinc finger RING-type profile. 286 327 IPR001841 -
Vifa1g03590 332 MobiDBLite consensus disorder prediction 22 36 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03590 Vifa-Chr1 554905470 554907734 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03590 45 330 C3H Transcription Factor Family AT4G26580 66.330 1.20e-133 382
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03590 - - gmx:100813670 509.22