Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03589 ATGTTTGTGAGGTGTTTGTTGAATTCCAACAGCATGGTTCAATCTTCAAATTCTGCATCAGAAGAAGAAAGAGTGGATGGTTCTAGAAATAGTCATAGGCATGATCATGTCTCGTTGCCGATGCCGCCTTCGTTTTCGGTTCGGATGGCTATGAGAATATCTAGATCAAGATGGTTTACTTTTTTGAGAAGAGTTTTCCATTACCAAAATGGGTCGAGGTCTAGTCTTGGCTCGAATCCTTTCAATTCCTGTACTTGGTTGATGTTGGAGTTCAGTGCTTTGATTGTTCAAATAATCGTTTCTACGTTCACTTTGGCTGTTTCGAATATGGAGAAACCTGTTTGGCCTATGAGGGTATGGATATCTGGTTATGATATTGGATGTGTTTTAAATTTGCTTGTAGTTTATGGACGGTACCGGCAAATTTATCTGATTCAAGGAGATGCTGTAAGCCTCTCTAATATGGAACAACAGAGAAACAGTGAAGACACAAGGATGTCACACTTGATGCACAAATGCAGGACTTCACTGGAGCTTTTCTTTGCCATATGGTTTGTGATGGGAAATGTTTGGGTTTTCGACTCACGTTTCGGTTCATTTCAACAAGCTCCAAAACTTCATGTCCTCTGCATCACCTTGCTTACATGGAATGCAATCTGTTACTCTTTCCCTTTCCTTCTTTTTCTTTTGTTATGCTGCTGCGTGCCACTGATTAGCTCCCTCCTCGGTTACAACATGAATATGGCATCTTCTAATAAAGGAGCATCCGAAGAACAAATTTCTCAACTTCCAAGTTGGATACATAGAGATCCTCATACCACCAAGTTAGATCTTGGAAACGACTCTGAAAGCATTGAAAATTTTATCAATGAAGATCCGGAATGTTGCATTTGCTTAGCCAAGTACAAAGACAAAGAAGAAGTTAGAAAATTGCCATGTTCTCATGTGTTCCATCTAAAATGTGTGGACCAGTGGCTGAAAATTATATCTTGCTGCCCACTTTGCAAACAAGGATTAGAGAGATAG 1026 0.3986 MFVRCLLNSNSMVQSSNSASEEERVDGSRNSHRHDHVSLPMPPSFSVRMAMRISRSRWFTFLRRVFHYQNGSRSSLGSNPFNSCTWLMLEFSALIVQIIVSTFTLAVSNMEKPVWPMRVWISGYDIGCVLNLLVVYGRYRQIYLIQGDAVSLSNMEQQRNSEDTRMSHLMHKCRTSLELFFAIWFVMGNVWVFDSRFGSFQQAPKLHVLCITLLTWNAICYSFPFLLFLLLCCCVPLISSLLGYNMNMASSNKGASEEQISQLPSWIHRDPHTTKLDLGNDSESIENFINEDPECCICLAKYKDKEEVRKLPCSHVFHLKCVDQWLKIISCCPLCKQGLER 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03589 341 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 19 338 - -
Vifa1g03589 341 SMART ring_2 295 335 IPR001841 -
Vifa1g03589 341 SUPERFAMILY RING/U-box 287 339 - -
Vifa1g03589 341 Pfam RING-like zinc finger 294 322 IPR001841 -
Vifa1g03589 341 MobiDBLite consensus disorder prediction 8 37 - -
Vifa1g03589 341 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 243 340 IPR013083 -
Vifa1g03589 341 MobiDBLite consensus disorder prediction 22 36 - -
Vifa1g03589 341 ProSiteProfiles Zinc finger RING-type profile. 295 336 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03589 Vifa-Chr1 554905470 554907734 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03589 45 339 C3H Transcription Factor Family AT4G26580 68.687 1.45e-141 402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03589 - - gmx:100813670 534.643