Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03588 ATGTTTGTGAGGTGTTTGTTGAATTCCAACAGCATGGTTCAATCTTCAAATTCTGCATCAGAAGAAGAAAGAGTGGATGGTTCTAGAAATAGTCATAGGCATGATCATGTCTCGTTGCCGATGCCGCCTTCGTTTTCGGTTCGGATGGCTATGAGAATATCTAGATCAAGATGGTTTACTTTTTTGAGAAGAGTTTTCCATTACCAAAATGGGTCGAGGTCTAGTCTTGGCTCGAATCCTTTCAATTCCTGTACTTGGTTGATGTTGGAGTTCAGTGCTTTGATTGTTCAAATAATCGTTTCTACGTTCACTTTGGCTGTTTCGAATATGGAGAAACCTGTTTGGCCTATGAGGGTATGGATATCTGGTTATGATATTGGATGTGTTTTAAATTTGCTTGTAGTTTATGGACGGTACCGGCAAATTTATCTGATTCAAGGAGATGCTGTAAGCCTCTCTAATATGGAACAACAGAGAAACAGTGAAGACACAAGTGTATACAGGATGTCACACTTGATGCACAAATGCAGGACTTCACTGGAGCTTTTCTTTGCCATATGGTTTGTGATGGGAAATGTTTGGGTTTTCGACTCACGTTTCGGTTCATTTCAACAAGCTCCAAAACTTCATGTCCTCTGCATCACCTTGCTTACATGGAATGCAATCTGTTACTCTTTCCCTTTCCTTCTTTTTCTTTTGTTATGCTGCTGCGTGCCACTGATTAGCTCCCTCCTCGGTTACAACATGAATATGGCATCTTCTAATAAAGGAGCATCCGAAGAACAAATTTCTCAACTTCCAAGTTGGATACATAGAGATCCTCATACCACCAAGTTAGATCTTGGAAACGACTCTGAAAGCATTGAAAATTTTATCAATGAAGATCCGGAATGTTGCATTTGCTTAGCCAAGTACAAAGACAAAGAAGAAGTTAGAAAATTGCCATGTTCTCATGTGTTCCATCTAAAATGTGTGGACCAGTGGCTGAAAATTATATCTTGCTGCCCACTTTGCAAACAAGGATTAGAGAGATAG 1035 0.3981 MFVRCLLNSNSMVQSSNSASEEERVDGSRNSHRHDHVSLPMPPSFSVRMAMRISRSRWFTFLRRVFHYQNGSRSSLGSNPFNSCTWLMLEFSALIVQIIVSTFTLAVSNMEKPVWPMRVWISGYDIGCVLNLLVVYGRYRQIYLIQGDAVSLSNMEQQRNSEDTSVYRMSHLMHKCRTSLELFFAIWFVMGNVWVFDSRFGSFQQAPKLHVLCITLLTWNAICYSFPFLLFLLLCCCVPLISSLLGYNMNMASSNKGASEEQISQLPSWIHRDPHTTKLDLGNDSESIENFINEDPECCICLAKYKDKEEVRKLPCSHVFHLKCVDQWLKIISCCPLCKQGLER 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03588 344 ProSiteProfiles Zinc finger RING-type profile. 298 339 IPR001841 -
Vifa1g03588 344 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 19 341 - -
Vifa1g03588 344 MobiDBLite consensus disorder prediction 8 37 - -
Vifa1g03588 344 SUPERFAMILY RING/U-box 290 342 - -
Vifa1g03588 344 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 246 343 IPR013083 -
Vifa1g03588 344 Pfam RING-like zinc finger 297 325 IPR001841 -
Vifa1g03588 344 SMART ring_2 298 338 IPR001841 -
Vifa1g03588 344 MobiDBLite consensus disorder prediction 22 36 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03588 Vifa-Chr1 554905470 554907734 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03588 45 342 C3H Transcription Factor Family AT4G26580 67.785 8.45e-141 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03588 - - gmx:100813670 529.25