Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03583 ATGGAAAATCTTAGAGAAGATGAGATTGAGGACAACATGTCAATGTCACCGCCTTCCGTTGGTTCCATGCAGATTGCAGGAAGCAATGGCTTTGGTCACAGCATGGAGTTCATGTCCCAGGCATATCTTCACAATAGGTACCCGGAGATTGATATACAGGTCAAGGATTCCACTTTCAACCAAGATCCTCCTCTCCCTGTATATCTCAAGTTTGAAGATGTAGAATTCAAAGTGCGAAATAGCCAAGTAGCTTCCAAGAACCCTGTGAAGACAATGGTGTCGAAGGTAGCCATGCCAAACAATGTGGAAGAGAAAAACAAATACAAGAAAATTTTAAAAGGTATCACTGGAAGCATTGGCCCGGGCGAAATCCTTGCTTTGATGGGTCCTTCTGGTAGTGGAAAGACAACATTGTTGAGAGTTGTAGGAGGAAGATTACTCGATAACGTTAAGGGAAAGATAACCTACAATGATGTTCCATATAGTCCCGCTCTAAAAAGGAGGATTGGATTTGTAACACAAGAGGATGTGCTTTTCCCGCAACTTACGGTAGAAGAAACATTAATCTTCTCTGCATTCTTAAGGCTACCAACCAACATGAGCAAGCAACAAAAATATGCGAGAGTTGAGAACACTGTCAAGGATCTAGGCCTAGAAAGATGTCGCCACACGAAAATAGGCGGAGGATATCTCAAAGGTATATCAGGAGGAGAAAGGAAGAGAACCAGCATAGGCTATGAAATTCTTGTTGATCCTTCATTGCTGCTTCTTGACGAGCCAACTTCAGGCCTTGATTCCACATCGGCAAACAAACTCCTTCTCACCCTTCAGGGACTTGCCAAGGCTGGAAGAACTATAATCACAACAATTCATCAGCCATCGAGCAGAATCTTTCACATGTTTGACAAACTTCTTCTGATATCAGAAGGCCATCCTATTTATTATGGGAAGGCTAGAGACACCGCAGAGTACTTTTCATCCTTGAGATTCATCCCGGAAATACCGATGAATCCTGCAGAGTTTTTGCTTGACTTAGCAACTGGTCAAGTGAATGATATAAGTGTTCCTCAAGATATTTTCAAAGATCAAGAATCTACTGACCCTTCAATAGCTGTTATTAAGTATGTACAACAAAAGTATAAAGACATATTGGAGCCAAAAGAAAAAGAAGAGAATCATAGAGAAGCAAACACACCAAAACATCTTCAACTAGCCATTCAGGTTAAAAAGGAATGGACATTGAGTTGGTTAGACCAATTCATTATTCTTTATAAGAGAACATTCAGAGCAAGATGCAAGGAGTATTTTGATGTATTAAGACTAGTCCAAGCAGTTGGAATTGCACTTTTGTTAGGATTACTTTGGTGGAAATCTTCAATCGATACAGAAGCTCAACTACGAGATCAGGTTGGTTTAATGTTCTATATTTGTATATTTTGGACATCTTCATGTATTTTTGGAGCAGTCTATGTATTTCCATTTGAAAAAGTGTACTTAAGAAAAGAAAGGAAAGCAGATATGTATAGGCTAAGTGTATACTATGCAAGTAGCACTCTATGTGACATGGGAGCACATGTTTTGTATCCTACATTTTTCATGCTTATTGTGTACTTCATGGCTGGGTTTAAGAACACTGCGGCTTGCTTCTTCCTCACGTTATTTGCAGTTTTGCTGATAGCTATAACAAGTCAAGGAGCAGGGGAATTATTTGGAGCTGCAGTTATGAGCATTCAAAGAGCAGGAATGGTTGCTTCTTTGATACTTATGTTGTTCCTTCTTACAGGTGGATACTATGTTCAGCATATACCAAAGTTCATGCAATGGTTGAAGTATATGTCATTCATGTACTATGGATTCAGGCTACTTCTAAAAGTGCAATATTCAGGAGATGAACTATATGAATGTGAAAGTGAGGATGGATGCAAGACACTTCAAAGTTCACCTTCATTTGATACTGTAAATCTGAATGGAGGTTTGACTGAAGTTTGGGTTCTGTTAGCCATGGCTCTTTGCTTTAGAGTGTTTGCTTACTTTTGTCTACGTAGAAGGATTGACATATCCATTTAG 2067 0.3943 MENLREDEIEDNMSMSPPSVGSMQIAGSNGFGHSMEFMSQAYLHNRYPEIDIQVKDSTFNQDPPLPVYLKFEDVEFKVRNSQVASKNPVKTMVSKVAMPNNVEEKNKYKKILKGITGSIGPGEILALMGPSGSGKTTLLRVVGGRLLDNVKGKITYNDVPYSPALKRRIGFVTQEDVLFPQLTVEETLIFSAFLRLPTNMSKQQKYARVENTVKDLGLERCRHTKIGGGYLKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLLLTLQGLAKAGRTIITTIHQPSSRIFHMFDKLLLISEGHPIYYGKARDTAEYFSSLRFIPEIPMNPAEFLLDLATGQVNDISVPQDIFKDQESTDPSIAVIKYVQQKYKDILEPKEKEENHREANTPKHLQLAIQVKKEWTLSWLDQFIILYKRTFRARCKEYFDVLRLVQAVGIALLLGLLWWKSSIDTEAQLRDQVGLMFYICIFWTSSCIFGAVYVFPFEKVYLRKERKADMYRLSVYYASSTLCDMGAHVLYPTFFMLIVYFMAGFKNTAACFFLTLFAVLLIAITSQGAGELFGAAVMSIQRAGMVASLILMLFLLTGGYYVQHIPKFMQWLKYMSFMYYGFRLLLKVQYSGDELYECESEDGCKTLQSSPSFDTVNLNGGLTEVWVLLAMALCFRVFAYFCLRRRIDISI 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03583 688 Pfam ABC transporter 112 262 IPR003439 GO:0005524
Vifa1g03583 688 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 107 326 IPR027417 -
Vifa1g03583 688 Pfam ABC-2 type transporter 291 353 IPR043926 GO:0140359
Vifa1g03583 688 Pfam ABC-2 type transporter 419 627 IPR013525 GO:0016020|GO:0140359
Vifa1g03583 688 Gene3D - 100 328 IPR027417 -
Vifa1g03583 688 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 56 675 - -
Vifa1g03583 688 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 97 334 IPR003439 GO:0005524
Vifa1g03583 688 FunFam ABC transporter G family member 22 100 328 - -
Vifa1g03583 688 SMART AAA_5 121 311 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03583 Vifa-Chr1 554506063 554509198 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03583 110 295 Calmodulin-binding Proteins AT2G36910 31.414 2.12e-13 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03583 K05681 - gmx:100815259 1196.8