LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa1g03581	ATGAAGATAAGAATCACTAAGTCGTTGGGTTTCACAGGAAACAAAAGGGAAGTGGAAACTGAGGTGGCAATAAAGCATACGAGAGAGTATGCTGAAATCACAAGGTTTGTATCTGTGAAGATTAGGGTGTTTTGGATTGGCTCTGATTTTGCTACAATGGAGATTAAGAATCAAGTTGAAGGCACAAAGTCAACGATAATCGGAACAGTTATTAAGTGTCATACCAAAGGTGGAGCAATGTCTGAAAATGTTGCGACAGCGAAGTCGCAGGATATACCTTCTGTTGGAAGTGACCAAACTCCCAAGGTGAGGAAACCGTATACCATCACTAAGCAAAGGGAGAAGTGGACTGAAGAAGAGCATCAAAAGTTCATCGAGGCTTTGAAGTTATATGGTCGTGGCTGGCGTCAAATTGAAGAACATATAGGGTCGAAAACTGCAGTTCAGATTCGAAGTCATGCTCAAAAGTTTTTCTCTAAGGTTGTGCGGGAACCTGATGGCAGCGCTGAAAGTCCTATTCAGCCGATTGACATACCTCCTCCTCGGCCGAAGAGGAAACCTCTTCATCCATACCCTCGCAAATCAGTTGAGTCTTTCAAAGGACAGTCCATCCTGAATGAATCAGAAACATCTCCATCCGTTAACCTGTCAGTTGCAGAGAACAACACCCAATCTCCAACTTCGGTACTATCAGCATTTGGTTCTGAAGCATTCGGGTCAGCAGCATTTTCTGAGCAGACTAACAGATGCCTTTCTCCAAACTCTTGTACCACCGAGATTCACCCGGTCAGCTTGTCGCCTCTTGAAAAAGAAAATGATTGCCATACATCGAAATCCTTTGAGGAGGAAGATAAAGGAACTCCAGCTTCAGTTCCTTTATCCACCGACTCAAAACCAATTATATGCACGAAGTCGGAGATTATTTCTTCGGAAGAAACTCAATGTTTCAAGGAAGATGCTGCGGATATGCCACAGATCACTAGTATTAAGCTGTTTGGCAGAACAGTCTCTATGGTTGATACTCAGAAAACAATAGACATAAAATCTGATGAAACTGTTGAGAATGAGAAAGCTGGCTTAGAAGAGGAGTCAGAGAAACTTGTTACACAACTATCACTAGGCATGTGTAGTGGTAATTGTCAAAGTATGGAACAACCCAAGGAGAATCCGTGCGGTGTCGGTGAATGCGGATCATCTTTACCATGTTGGAGTTTGTACCAAGGCCTTCCAGCTTTGAGCCTCAAGCCATGCAATCATCAGATTTTAAGTCCTGTGCCTGTCAGGCCTTGTTTGAAGGTAAGAACTCGAGAGGAGGAAAGTTCTTGCACTGGTTCTAATACCGGATCAGTTTGTGATGTGGAAAATCAAAGCAAGAACAATTTATCAGATACCGATGATACTCAAAGCCAAAAACATCATCATGAAGGTGAAGGAGTATTCCTGAAGAAATCTGGAAGAGGGTTTGTACCATATAAAAGATGTTTATCTGAAAGAGACGAAAATTCTTTCATTGTTGGGTTGGAAGAAAGAGAAGGGCAAAGAGCTCGTGTGTGTTCATAG	1560	0.425	MKIRITKSLGFTGNKREVETEVAIKHTREYAEITRFVSVKIRVFWIGSDFATMEIKNQVEGTKSTIIGTVIKCHTKGGAMSENVATAKSQDIPSVGSDQTPKVRKPYTITKQREKWTEEEHQKFIEALKLYGRGWRQIEEHIGSKTAVQIRSHAQKFFSKVVREPDGSAESPIQPIDIPPPRPKRKPLHPYPRKSVESFKGQSILNESETSPSVNLSVAENNTQSPTSVLSAFGSEAFGSAAFSEQTNRCLSPNSCTTEIHPVSLSPLEKENDCHTSKSFEEEDKGTPASVPLSTDSKPIICTKSEIISSEETQCFKEDAADMPQITSIKLFGRTVSMVDTQKTIDIKSDETVENEKAGLEEESEKLVTQLSLGMCSGNCQSMEQPKENPCGVGECGSSLPCWSLYQGLPALSLKPCNHQILSPVPVRPCLKVRTREEESSCTGSNTGSVCDVENQSKNNLSDTDDTQSQKHHHEGEGVFLKKSGRGFVPYKRCLSERDENSFIVGLEEREGQRARVCS	519

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa1g03581	519	ProSiteProfiles	Myb-like domain profile.	108	158	IPR001005	-
	Vifa1g03581	519	PANTHER	SWI/SNF COMPLEX-RELATED	93	431	-	-
	Vifa1g03581	519	MobiDBLite	consensus disorder prediction	267	294	-	-
	Vifa1g03581	519	ProSiteProfiles	SANT domain profile.	111	162	IPR017884	-
	Vifa1g03581	519	FunFam	protein REVEILLE 6 isoform X1	115	163	-	-
	Vifa1g03581	519	SUPERFAMILY	Homeodomain-like	107	161	IPR009057	-
	Vifa1g03581	519	Coils	Coil	350	370	-	-
	Vifa1g03581	519	CDD	SANT	115	158	IPR001005	-
	Vifa1g03581	519	SMART	sant	112	160	IPR001005	-
	Vifa1g03581	519	MobiDBLite	consensus disorder prediction	199	214	-	-
	Vifa1g03581	519	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	108	162	IPR017930	-
	Vifa1g03581	519	MobiDBLite	consensus disorder prediction	162	214	-	-
	Vifa1g03581	519	Gene3D	-	115	162	-	-
	Vifa1g03581	519	MobiDBLite	consensus disorder prediction	453	479	-	-
	Vifa1g03581	519	MobiDBLite	consensus disorder prediction	267	285	-	-
	Vifa1g03581	519	MobiDBLite	consensus disorder prediction	465	479	-	-
	Vifa1g03581	519	Pfam	Myb-like DNA-binding domain	113	156	IPR001005	-
	Vifa1g03581	519	NCBIfam	myb-like DNA-binding domain, SHAQKYF class	111	160	IPR006447	GO:0003677

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa1g03581	Vifa-Chr1	554314615	554318994	Dispersed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB-related	Vifa1g03581		Myb_DNA-binding	2.9e-13	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa1g03581	-		-	gmx:778089	572.778