Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa1g03581 | ATGAAGATAAGAATCACTAAGTCGTTGGGTTTCACAGGAAACAAAAGGGAAGTGGAAACTGAGGTGGCAATAAAGCATACGAGAGAGTATGCTGAAATCACAAGGTTTGTATCTGTGAAGATTAGGGTGTTTTGGATTGGCTCTGATTTTGCTACAATGGAGATTAAGAATCAAGTTGAAGGCACAAAGTCAACGATAATCGGAACAGTTATTAAGTGTCATACCAAAGGTGGAGCAATGTCTGAAAATGTTGCGACAGCGAAGTCGCAGGATATACCTTCTGTTGGAAGTGACCAAACTCCCAAGGTGAGGAAACCGTATACCATCACTAAGCAAAGGGAGAAGTGGACTGAAGAAGAGCATCAAAAGTTCATCGAGGCTTTGAAGTTATATGGTCGTGGCTGGCGTCAAATTGAAGAACATATAGGGTCGAAAACTGCAGTTCAGATTCGAAGTCATGCTCAAAAGTTTTTCTCTAAGGTTGTGCGGGAACCTGATGGCAGCGCTGAAAGTCCTATTCAGCCGATTGACATACCTCCTCCTCGGCCGAAGAGGAAACCTCTTCATCCATACCCTCGCAAATCAGTTGAGTCTTTCAAAGGACAGTCCATCCTGAATGAATCAGAAACATCTCCATCCGTTAACCTGTCAGTTGCAGAGAACAACACCCAATCTCCAACTTCGGTACTATCAGCATTTGGTTCTGAAGCATTCGGGTCAGCAGCATTTTCTGAGCAGACTAACAGATGCCTTTCTCCAAACTCTTGTACCACCGAGATTCACCCGGTCAGCTTGTCGCCTCTTGAAAAAGAAAATGATTGCCATACATCGAAATCCTTTGAGGAGGAAGATAAAGGAACTCCAGCTTCAGTTCCTTTATCCACCGACTCAAAACCAATTATATGCACGAAGTCGGAGATTATTTCTTCGGAAGAAACTCAATGTTTCAAGGAAGATGCTGCGGATATGCCACAGATCACTAGTATTAAGCTGTTTGGCAGAACAGTCTCTATGGTTGATACTCAGAAAACAATAGACATAAAATCTGATGAAACTGTTGAGAATGAGAAAGCTGGCTTAGAAGAGGAGTCAGAGAAACTTGTTACACAACTATCACTAGGCATGTGTAGTGGTAATTGTCAAAGTATGGAACAACCCAAGGAGAATCCGTGCGGTGTCGGTGAATGCGGATCATCTTTACCATGTTGGAGTTTGTACCAAGGCCTTCCAGCTTTGAGCCTCAAGCCATGCAATCATCAGATTTTAAGTCCTGTGCCTGTCAGGCCTTGTTTGAAGGTAAGAACTCGAGAGGAGGAAAGTTCTTGCACTGGTTCTAATACCGGATCAGTTTGTGATGTGGAAAATCAAAGCAAGAACAATTTATCAGATACCGATGATACTCAAAGCCAAAAACATCATCATGAAGGTGAAGGAGTATTCCTGAAGAAATCTGGAAGAGGGTTTGTACCATATAAAAGATGTTTATCTGAAAGAGACGAAAATTCTTTCATTGTTGGGTTGGAAGAAAGAGAAGGGCAAAGAGCTCGTGTGTGTTCATAG | 1560 | 0.425 | MKIRITKSLGFTGNKREVETEVAIKHTREYAEITRFVSVKIRVFWIGSDFATMEIKNQVEGTKSTIIGTVIKCHTKGGAMSENVATAKSQDIPSVGSDQTPKVRKPYTITKQREKWTEEEHQKFIEALKLYGRGWRQIEEHIGSKTAVQIRSHAQKFFSKVVREPDGSAESPIQPIDIPPPRPKRKPLHPYPRKSVESFKGQSILNESETSPSVNLSVAENNTQSPTSVLSAFGSEAFGSAAFSEQTNRCLSPNSCTTEIHPVSLSPLEKENDCHTSKSFEEEDKGTPASVPLSTDSKPIICTKSEIISSEETQCFKEDAADMPQITSIKLFGRTVSMVDTQKTIDIKSDETVENEKAGLEEESEKLVTQLSLGMCSGNCQSMEQPKENPCGVGECGSSLPCWSLYQGLPALSLKPCNHQILSPVPVRPCLKVRTREEESSCTGSNTGSVCDVENQSKNNLSDTDDTQSQKHHHEGEGVFLKKSGRGFVPYKRCLSERDENSFIVGLEEREGQRARVCS | 519 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa1g03581 | 519 | ProSiteProfiles | Myb-like domain profile. | 108 | 158 | IPR001005 | - | |
Vifa1g03581 | 519 | PANTHER | SWI/SNF COMPLEX-RELATED | 93 | 431 | - | - | |
Vifa1g03581 | 519 | MobiDBLite | consensus disorder prediction | 267 | 294 | - | - | |
Vifa1g03581 | 519 | ProSiteProfiles | SANT domain profile. | 111 | 162 | IPR017884 | - | |
Vifa1g03581 | 519 | FunFam | protein REVEILLE 6 isoform X1 | 115 | 163 | - | - | |
Vifa1g03581 | 519 | SUPERFAMILY | Homeodomain-like | 107 | 161 | IPR009057 | - | |
Vifa1g03581 | 519 | Coils | Coil | 350 | 370 | - | - | |
Vifa1g03581 | 519 | CDD | SANT | 115 | 158 | IPR001005 | - | |
Vifa1g03581 | 519 | SMART | sant | 112 | 160 | IPR001005 | - | |
Vifa1g03581 | 519 | MobiDBLite | consensus disorder prediction | 199 | 214 | - | - | |
Vifa1g03581 | 519 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 108 | 162 | IPR017930 | - | |
Vifa1g03581 | 519 | MobiDBLite | consensus disorder prediction | 162 | 214 | - | - | |
Vifa1g03581 | 519 | Gene3D | - | 115 | 162 | - | - | |
Vifa1g03581 | 519 | MobiDBLite | consensus disorder prediction | 453 | 479 | - | - | |
Vifa1g03581 | 519 | MobiDBLite | consensus disorder prediction | 267 | 285 | - | - | |
Vifa1g03581 | 519 | MobiDBLite | consensus disorder prediction | 465 | 479 | - | - | |
Vifa1g03581 | 519 | Pfam | Myb-like DNA-binding domain | 113 | 156 | IPR001005 | - | |
Vifa1g03581 | 519 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 111 | 160 | IPR006447 | GO:0003677 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa1g03581 | Vifa-Chr1 | 554314615 | 554318994 | Dispersed |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | MYB-related | Vifa1g03581 | Myb_DNA-binding | 2.9e-13 | CL0123 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa1g03581 | - | - | gmx:778089 | 572.778 |