Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03581 ATGAAGATAAGAATCACTAAGTCGTTGGGTTTCACAGGAAACAAAAGGGAAGTGGAAACTGAGGTGGCAATAAAGCATACGAGAGAGTATGCTGAAATCACAAGGTTTGTATCTGTGAAGATTAGGGTGTTTTGGATTGGCTCTGATTTTGCTACAATGGAGATTAAGAATCAAGTTGAAGGCACAAAGTCAACGATAATCGGAACAGTTATTAAGTGTCATACCAAAGGTGGAGCAATGTCTGAAAATGTTGCGACAGCGAAGTCGCAGGATATACCTTCTGTTGGAAGTGACCAAACTCCCAAGGTGAGGAAACCGTATACCATCACTAAGCAAAGGGAGAAGTGGACTGAAGAAGAGCATCAAAAGTTCATCGAGGCTTTGAAGTTATATGGTCGTGGCTGGCGTCAAATTGAAGAACATATAGGGTCGAAAACTGCAGTTCAGATTCGAAGTCATGCTCAAAAGTTTTTCTCTAAGGTTGTGCGGGAACCTGATGGCAGCGCTGAAAGTCCTATTCAGCCGATTGACATACCTCCTCCTCGGCCGAAGAGGAAACCTCTTCATCCATACCCTCGCAAATCAGTTGAGTCTTTCAAAGGACAGTCCATCCTGAATGAATCAGAAACATCTCCATCCGTTAACCTGTCAGTTGCAGAGAACAACACCCAATCTCCAACTTCGGTACTATCAGCATTTGGTTCTGAAGCATTCGGGTCAGCAGCATTTTCTGAGCAGACTAACAGATGCCTTTCTCCAAACTCTTGTACCACCGAGATTCACCCGGTCAGCTTGTCGCCTCTTGAAAAAGAAAATGATTGCCATACATCGAAATCCTTTGAGGAGGAAGATAAAGGAACTCCAGCTTCAGTTCCTTTATCCACCGACTCAAAACCAATTATATGCACGAAGTCGGAGATTATTTCTTCGGAAGAAACTCAATGTTTCAAGGAAGATGCTGCGGATATGCCACAGATCACTAGTATTAAGCTGTTTGGCAGAACAGTCTCTATGGTTGATACTCAGAAAACAATAGACATAAAATCTGATGAAACTGTTGAGAATGAGAAAGCTGGCTTAGAAGAGGAGTCAGAGAAACTTGTTACACAACTATCACTAGGCATGTGTAGTGGTAATTGTCAAAGTATGGAACAACCCAAGGAGAATCCGTGCGGTGTCGGTGAATGCGGATCATCTTTACCATGTTGGAGTTTGTACCAAGGCCTTCCAGCTTTGAGCCTCAAGCCATGCAATCATCAGATTTTAAGTCCTGTGCCTGTCAGGCCTTGTTTGAAGGTAAGAACTCGAGAGGAGGAAAGTTCTTGCACTGGTTCTAATACCGGATCAGTTTGTGATGTGGAAAATCAAAGCAAGAACAATTTATCAGATACCGATGATACTCAAAGCCAAAAACATCATCATGAAGGTGAAGGAGTATTCCTGAAGAAATCTGGAAGAGGGTTTGTACCATATAAAAGATGTTTATCTGAAAGAGACGAAAATTCTTTCATTGTTGGGTTGGAAGAAAGAGAAGGGCAAAGAGCTCGTGTGTGTTCATAG 1560 0.425 MKIRITKSLGFTGNKREVETEVAIKHTREYAEITRFVSVKIRVFWIGSDFATMEIKNQVEGTKSTIIGTVIKCHTKGGAMSENVATAKSQDIPSVGSDQTPKVRKPYTITKQREKWTEEEHQKFIEALKLYGRGWRQIEEHIGSKTAVQIRSHAQKFFSKVVREPDGSAESPIQPIDIPPPRPKRKPLHPYPRKSVESFKGQSILNESETSPSVNLSVAENNTQSPTSVLSAFGSEAFGSAAFSEQTNRCLSPNSCTTEIHPVSLSPLEKENDCHTSKSFEEEDKGTPASVPLSTDSKPIICTKSEIISSEETQCFKEDAADMPQITSIKLFGRTVSMVDTQKTIDIKSDETVENEKAGLEEESEKLVTQLSLGMCSGNCQSMEQPKENPCGVGECGSSLPCWSLYQGLPALSLKPCNHQILSPVPVRPCLKVRTREEESSCTGSNTGSVCDVENQSKNNLSDTDDTQSQKHHHEGEGVFLKKSGRGFVPYKRCLSERDENSFIVGLEEREGQRARVCS 519
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03581 519 ProSiteProfiles Myb-like domain profile. 108 158 IPR001005 -
Vifa1g03581 519 PANTHER SWI/SNF COMPLEX-RELATED 93 431 - -
Vifa1g03581 519 MobiDBLite consensus disorder prediction 267 294 - -
Vifa1g03581 519 ProSiteProfiles SANT domain profile. 111 162 IPR017884 -
Vifa1g03581 519 FunFam protein REVEILLE 6 isoform X1 115 163 - -
Vifa1g03581 519 SUPERFAMILY Homeodomain-like 107 161 IPR009057 -
Vifa1g03581 519 Coils Coil 350 370 - -
Vifa1g03581 519 CDD SANT 115 158 IPR001005 -
Vifa1g03581 519 SMART sant 112 160 IPR001005 -
Vifa1g03581 519 MobiDBLite consensus disorder prediction 199 214 - -
Vifa1g03581 519 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 108 162 IPR017930 -
Vifa1g03581 519 MobiDBLite consensus disorder prediction 162 214 - -
Vifa1g03581 519 Gene3D - 115 162 - -
Vifa1g03581 519 MobiDBLite consensus disorder prediction 453 479 - -
Vifa1g03581 519 MobiDBLite consensus disorder prediction 267 285 - -
Vifa1g03581 519 MobiDBLite consensus disorder prediction 465 479 - -
Vifa1g03581 519 Pfam Myb-like DNA-binding domain 113 156 IPR001005 -
Vifa1g03581 519 NCBIfam myb-like DNA-binding domain, SHAQKYF class 111 160 IPR006447 GO:0003677
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vifa1g03581 Vifa-Chr1 554314615 554318994 Dispersed
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vifa1g03581 Myb_DNA-binding 2.9e-13 CL0123
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03581 - - gmx:778089 572.778