Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03580 ATGGTTATTCCTGCTATTGCTATGGCTAACATTGTTGTTAGAGTACCTTCTCTTTCTGTTCCTTCAAATGCTTTCACTCTCAACTCCAAAATTAATACCCCTAACCATAAACTTCATCTCAACTTCTCACAAACCAACCACACAACAACCCCATTTCCATCTTCCTTATCATCATCATCATCATCATCATCATCATCATCAAAATCACTCAGAAACAGAACTAGTTATTCTGCGTTGGCTTCTCTTCCCCCTGCTTCTGAATCCTCATCTTCCAATACTACACCCTCTTCTACTTCTCCTTCAACTAGGCTATATGTCAGTGGGCTATCCTTTCGTACAACGGAAGAAAGCTTGCGAAATGCATTTAAGAATTTCGGTCAACTCGTCGAAGTAAATCTTGTGATGGATAAAATTGCGAATAGACCAAGAGGGTTTGCTTTCCTTCGTTATGAAACTGAAGAGGGATCCAACAAGGCTATAGAAGGAATGCATGGAAAGTTCCTGGATGGTAGAGTCATATTTGTGGAAATCGCCAAACCAAGATCAGAGCTGCGACAAAGATTCAAACAGAACACTGTGTAG 582 0.4038 MVIPAIAMANIVVRVPSLSVPSNAFTLNSKINTPNHKLHLNFSQTNHTTTPFPSSLSSSSSSSSSSSKSLRNRTSYSALASLPPASESSSSNTTPSSTSPSTRLYVSGLSFRTTEESLRNAFKNFGQLVEVNLVMDKIANRPRGFAFLRYETEEGSNKAIEGMHGKFLDGRVIFVEIAKPRSELRQRFKQNTV 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03580 193 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 104 173 IPR000504 GO:0003723
Vifa1g03580 193 SUPERFAMILY RNA-binding domain, RBD 89 189 IPR035979 GO:0003676
Vifa1g03580 193 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 102 180 IPR000504 GO:0003723
Vifa1g03580 193 SMART rrm1_1 103 176 IPR000504 GO:0003723
Vifa1g03580 193 Gene3D - 42 191 IPR012677 -
Vifa1g03580 193 PANTHER NUCLEOLAR PROTEIN 8 88 187 - -
Vifa1g03580 193 MobiDBLite consensus disorder prediction 81 103 - -
Vifa1g03580 193 MobiDBLite consensus disorder prediction 41 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03580 Vifa-Chr1 554311793 554313311 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03580 102 191 Eukaryotic Initiation Factors Gene Family AT4G34110 31.915 4.56e-11 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03580 - K13195 gmx:100305561 186.422
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g03580 1 554311793 554313311 Vifa1g03580 1 554311793 554313311 ECH