Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03577 ATGTCACCAGTTGGATTACCACCAGGTTTCAGATTTCATCCAACTGATGAAGAACTTGTCAATTATTATCTAAAGAGAAAAATCAGTGGTCAAGAGATTGAACTTGATATCATTCCTGAAGTTGATCTTTATAAATGTGAACCTTGGGAATTAGCAGAGAAATCGTTTTTGCCAAGTAGAGATCCAGAGTGGTATTTTTTTGGACCAAGGGACAGAAAGTATCCAAATGGATTCAGAACAAATAGAGCAACAAGAGCAGGTTACTGGAAATCAACTGGAAAAGACAGAAGAGTTTCATGCCAAAATAGACCTATTGGTATGAAGAAGACTTTGGTTTACTATAGAGGAAGAGCTCCTCAAGGAATTAGAACTGATTGGGTTATGCATGAGTATCGTCTCGACGATAAAGAGTGTGAGGACAACTCTGGATTACAGGATACCTATGCATTGTGTCGCGTGTTCAAGAAAAATGGAATTTGTTCAGATATGGAAGAGCAACAAGCGCAAGTACAATGTAACATGTCACTGATAGAATGCTCCCAAACCATAATCAATGAGTGTGAAACGATGTCTCCAGACATACTTGGTGCATCATCTTCATGCTTAGAAGAGGAAGACAAAGATGATTCATGGATGCAGTTCATTACAGAAGATGCATGGTATTCTTCTAATGCAGGAATGGTTGGTGGTGAAGAAGTTTCACATGTTACATTTACAAACTAA 723 0.3817 MSPVGLPPGFRFHPTDEELVNYYLKRKISGQEIELDIIPEVDLYKCEPWELAEKSFLPSRDPEWYFFGPRDRKYPNGFRTNRATRAGYWKSTGKDRRVSCQNRPIGMKKTLVYYRGRAPQGIRTDWVMHEYRLDDKECEDNSGLQDTYALCRVFKKNGICSDMEEQQAQVQCNMSLIECSQTIINECETMSPDILGASSSCLEEEDKDDSWMQFITEDAWYSSNAGMVGGEEVSHVTFTN 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03577 240 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 188 - -
Vifa1g03577 240 FunFam Nac domain-containing protein 86 15 159 - -
Vifa1g03577 240 ProSiteProfiles NAC domain profile. 6 156 IPR003441 GO:0003677|GO:0006355
Vifa1g03577 240 Pfam No apical meristem (NAM) protein 7 133 IPR003441 GO:0003677|GO:0006355
Vifa1g03577 240 Gene3D NAC domain 15 159 IPR036093 GO:0003677|GO:0006355
Vifa1g03577 240 SUPERFAMILY NAC domain 4 157 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03577 Vifa-Chr1 554203857 554206796 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03577 1 231 NAC Transcription Factor Family AT3G17730 75.207 1.26e-131 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vifa1g03577 NAM 1.1e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03577 - - gmx:100788036 478.018