Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03554 ATGGTTAGGAAGAGGAGAACTGATGGACCTGGTGGTGAAAGCTCTGATGGTCAACACCCTTCTGAGAGGAATGTTCCCCCTCAACAACAGGCTGCCGTATCTGGAGGTGCAGGATCCCAGGGAGGGGGAGGGCCCCAAGGAGGGCGAGGCTGGGCTCCCCAAGGTGGACGTGGGGGTTATGGAGGTGGACGGGGTGGTCGTGGAATGCCCCAACAGCAATATGGTGCTCCCCCCGAGTATCAAGGAAGAGGCAGAGGCAGGGGAGGACCTTCTCATCAAGGAGGTCGTGGATATGGCGGTGGCCGAGGGGGATATGGTGGTGGTGTGGGCCCTGGTGGTGGCCATGACACAGTAACTTCTTATGGAGGCCCACCTAGGCCACCAGCACCCGAGCTGCACCAAGCTACCTCAGTTCCTTCTGCGTCATATCCAGTTGCGGTGTCTCCTCCACCTGCACTGAGTGAGGCAAGTTCATCTTCTCAGCCACCACAAGTGTCTGAAGTGGGACAGGATCTGGGACAGATGACAATTCATTCTGAAGAGACTCCCGCCCCTCCGCCTGCAAGTAAATCATCACTGAGGTTTCCCCTTCGACCTGGAAAAGGGAGCTATGGCAAGAAATGTGTTGTTAAGGCGAACCACTTTTTTGCTGAGTTGCCAAAGAAAGACCTGCATCAGTATGATGTGACAATTACTCCAGAAGTGACTTCCAGAGGTGTGAACCGCGCTGTAATGGAGCAGCTTGTGAGATTGTATCGGGATTCTCACCTGGGAAAGAGACTTCCGGCTTATGATGGCCGTAAGAGCCTCTATACTGCAGGGCCACTTCCTTTTATTTCAAAGGACTTCAGAATCACCCTCGTTGATGAAGATGATGGGTCAGGAGGGCAGAGGAGGGACAGGGAGTTTAAAGTTGTTATTAAACTTGCTGCACGTGCTGACCTTCACCACCTGGGTCTCTTTTTGGAGGGGAGGCAAACTGATGCACCTCAGGAAGCTCTGCAAGTTCTTGACATTGTTCTCCGGGAACTTCCTACTACCAGGTATTGTCCAGTGGGAAGGTCATTTTATTCCCCTCATCTAGGTAGAAGGCAACCTCTTGGTGAGGGGTTGGAAAGTTGGCGAGGATTTTATCAAAGTATTCGTCCTACTCAAATGGGACTGTCTCTGAACATTGACATGTCTTCAACTGCATTTATTGAGCCACTGCCTGTGATAGAGTTCGTTGCCCAGTTGCTGAATAGGGAAGTCTCATCCAGGCCTCTGTCTGATGCTGATCGGGTCAAGATAAAAAAAGCACTTCGTGGTATCAAAGTTGAAGTAACACATCGTGGCAACATGAGGAGGAAATATCGTATTTCTGGTTTGACATCACAAGCTACCAGAGAGCTGACATTCCCTGTGGATGAAAGGGGGACTATGAAGTCTGTTGTAGAATATTTCTTCGAGACATACGGCTTTGTCATTCAACATACTCAGTGGCCTTGTTTGCAAGTGGGCAACACTCAGAGACCAAACTACCTTCCAATGGAGGTTTGCAAGATTGTTGAGGGGCAAAGGTACTCAAAACGATTGAATGAGCGGCAAATTACTGCTCTGCTCAAAGTCACATGCCAACGTCCACTAGATAGGGAACGTGACATCATGCAGACAGTACATCATAATGCCTACCATGAAGATCCTTATGCTAAAGAATTTGGAATCAAAATCAGTGAAAAGCTTGCTCAAGTCGAAGCCCGCATCCTTCCTGCGCCTTGGCTCAAATATCATGATACTGGTAGAGAGAAGGATTGTCTACCCCAAGTTGGCCAATGGAATATGATGAATAAGAAAATGGTCAATGGGGGAACAGTTAGCAATTGGTTCTGTGTAAACTTCTCCAGGAATGTGCAGGACAGTGTTGCACGTGGCTTTTGTCATGAACTTGCCCAGATGTGTTGCATATCTGGCATGGCGTTTAATCCTGATCCAGTAGTTCCACCAGTAAGTGCTCGTCCTGACCAAGTTGAGAAGGTTCTGAAAACCCGTCATCATGATGCCAAGACCAAGCTGCAGGGAAAAGATCTCGACCTGCTCATTGTCATTTTGCCGGATAATAATGGTTCTCTTTATGGTGACCTCAAGCGTATTTGTGAGACTGACTTGGGGGTTGTTTCCCAGTGTTGTTTGACCAAACATGTTTTTAAGATGAGCAAGCAGTACCTTGCAAATGTTTCCTTAAAAATAAATGTTAAAGTTGGGGGTAGGAATACTGTGCTCGTTGATGCACTTTCACGACGCATTCCACTAGTAAGTGACAGACCTACTATTATATTTGGAGCTGATGTGACTCATCCACACCCTGGTGAAGATTCAAGTCCATCAATAGCAGCTGTTGTTGCTTCTCAAGATTGGCCAGAAATCACCAAGTATGCTGGTTTAGTTTGTGCTCAAGCACATAGGCAGGAATTAATTCAAGACCTTTTCAAACAATGGCAAGATCCAGTCAGAGGAACATTGACTGGTGGAATGATCAAGGAACTTCTTATATCATTCAGGAGAGCAACTGGTCAAAAGCCCCAGCGCATCATATTTTACAGAGATGGAGTTAGCGAAGGGCAATTTTACCAGGTCCTGCTGTTTGAGCTTGATGCAATCCGGAAAGCTTGTGCTTCACTTGAACCCAATTATCAGCCTCCTGTGACTTTTGTGGTGGTTCAAAAACGTCATCATACTAGACTCTTTGCCAGTAACCACCATGACAAGAGTTCTGTTGATCGTAGTGGCAATATATTACCTGGAACTGTTGTGGATTCTAAGATCTGCCATCCAACAGAGTTTGACTTCTACCTTTGCAGTCATGCCGGAATACAGGGTACTAGCAGACCAGCTCACTATCATGTTTTGTGGGATGAAAATAATTTTACTGCTGATGCTTTGCAAAGTCTAACTAACAACTTGTGCTACACATATGCCAGATGCACCCGCTCTGTTTCAATTGTGCCCCCTGCTTATTATGCTCATTTGGCTGCATTCCGGGCAAGGTTCTATATGGAACCAGAGACTTCTGATAGCGGTTCTATGACAAGCGGGGCAGTTCCTCGTGGTGGAATGGCAGCTGCTGCTGGGCGTAGTTCACGTGCACCGGGTGCAAATGCTGCTGTCCGACCCCTGCCTGCATTGAAGGAGAATGTCAAGAGGGTTATGTTTTATTGCTGA 3198 0.4753 MVRKRRTDGPGGESSDGQHPSERNVPPQQQAAVSGGAGSQGGGGPQGGRGWAPQGGRGGYGGGRGGRGMPQQQYGAPPEYQGRGRGRGGPSHQGGRGYGGGRGGYGGGVGPGGGHDTVTSYGGPPRPPAPELHQATSVPSASYPVAVSPPPALSEASSSSQPPQVSEVGQDLGQMTIHSEETPAPPPASKSSLRFPLRPGKGSYGKKCVVKANHFFAELPKKDLHQYDVTITPEVTSRGVNRAVMEQLVRLYRDSHLGKRLPAYDGRKSLYTAGPLPFISKDFRITLVDEDDGSGGQRRDREFKVVIKLAARADLHHLGLFLEGRQTDAPQEALQVLDIVLRELPTTRYCPVGRSFYSPHLGRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIEFVAQLLNREVSSRPLSDADRVKIKKALRGIKVEVTHRGNMRRKYRISGLTSQATRELTFPVDERGTMKSVVEYFFETYGFVIQHTQWPCLQVGNTQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPLDRERDIMQTVHHNAYHEDPYAKEFGIKISEKLAQVEARILPAPWLKYHDTGREKDCLPQVGQWNMMNKKMVNGGTVSNWFCVNFSRNVQDSVARGFCHELAQMCCISGMAFNPDPVVPPVSARPDQVEKVLKTRHHDAKTKLQGKDLDLLIVILPDNNGSLYGDLKRICETDLGVVSQCCLTKHVFKMSKQYLANVSLKINVKVGGRNTVLVDALSRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEITKYAGLVCAQAHRQELIQDLFKQWQDPVRGTLTGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLFELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFASNHHDKSSVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADALQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSMTSGAVPRGGMAAAAGRSSRAPGANAAVRPLPALKENVKRVMFYC 1065
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03554 1065 MobiDBLite consensus disorder prediction 1 197 - -
Vifa1g03554 1065 FunFam Protein argonaute-2 396 522 - -
Vifa1g03554 1065 SMART DUF1785_2 350 402 IPR014811 -
Vifa1g03554 1065 MobiDBLite consensus disorder prediction 17 36 - -
Vifa1g03554 1065 MobiDBLite consensus disorder prediction 152 177 - -
Vifa1g03554 1065 Pfam PAZ domain 408 532 IPR003100 GO:0005515
Vifa1g03554 1065 Gene3D paz domain 396 521 - -
Vifa1g03554 1065 Gene3D - 581 754 - -
Vifa1g03554 1065 Pfam Piwi domain 692 1011 IPR003165 GO:0003676
Vifa1g03554 1065 Pfam Argonaute linker 2 domain 543 589 IPR032472 -
Vifa1g03554 1065 SMART Piwi_a_2 691 1012 IPR003165 GO:0003676
Vifa1g03554 1065 SUPERFAMILY PAZ domain 209 554 IPR036085 GO:0005515
Vifa1g03554 1065 CDD Piwi_ago-like 561 1011 IPR045246 -
Vifa1g03554 1065 Pfam Argonaute linker 1 domain 351 401 IPR014811 -
Vifa1g03554 1065 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 184 1013 - -
Vifa1g03554 1065 ProSiteProfiles Piwi domain profile. 691 1012 IPR003165 GO:0003676
Vifa1g03554 1065 SUPERFAMILY Ribonuclease H-like 682 1012 IPR012337 -
Vifa1g03554 1065 CDD PAZ_argonaute_like 402 516 - -
Vifa1g03554 1065 Pfam Glycine-rich region of argonaut 75 183 IPR024357 -
Vifa1g03554 1065 Pfam Mid domain of argonaute 600 675 IPR032473 -
Vifa1g03554 1065 FunFam Argonaute 10 581 754 - -
Vifa1g03554 1065 ProSiteProfiles PAZ domain profile. 403 517 IPR003100 GO:0005515
Vifa1g03554 1065 FunFam protein argonaute 10-like 760 1065 - -
Vifa1g03554 1065 Pfam N-terminal domain of argonaute 206 341 IPR032474 -
Vifa1g03554 1065 Gene3D - 760 1065 IPR036397 GO:0003676
Vifa1g03554 1065 SMART PAZ_2_a_3 407 539 IPR003100 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03554 Vifa-Chr1 550869019 550875131 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03554 79 1065 Eukaryotic Initiation Factors Gene Family AT1G48410 80.463 0.0 1618
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03554 K11593 - gmx:100780375 1776.53