Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03552 ATGGCTGAGTTTGGGACAGATGAAGTGCCAATGCTGTCCGAAACTAATCCGAAACAATCAAATGAACACGATGATTTCAAATTCAAGACTCGTGTATCTAGAACGCGAAGTGTATCGATTTCCATTCCCATGGTTCCTATTGACTCATACGAAACAGATACTAATCTCAAGAGACACACCGGTCCTCTAAGGAGTAAAAGAAAAACACAATATAATCCAATGAGTGGTCCGTTATATGTTACTGATAAATCTGGAAATGTTTTTAGGCAGAATATGACCGTGCCGATGAGCAACGCTGTGGAAAGTAAGACAGAAAAGTTTCCTTTAAGTGGCCAGAATGAACGCGATTCGCAGTATCACTATGCTAATAAAAATGAACATTTAGTAAGATCTGGTCAATTGGGAATGTGTAATGATCCATACTGTACTACCTGTCCGGCTTACTTCAAGGCTACTCAACCAAGGGATTCGAAAAATTCGGGTTTGTTCAATCCTAAGTTTCAGAATGTTCTCTATGGAGATGCCAAGGATTGGGCAAGAAGAATTTCCAATTTCTTGATTCCTAATGTACCTAGAGTTATGAATCCGCATAATAAACTAGTACAGCAATGGAATAAATTTTTTGCAATTTGTTGCTTGGTGGCAATTTATGTCGATCCGTTATTTTTCTTCTTGCTCTATGTGAATAAGGTACAAAAATGTATTGTTATTAACTCTACAATGACAACAGTGCTTGTTATACTTAGAAGTACGAATGACTTCATACATTTCCTAAATATTATTCTTCAGTTTAGGTTGGCTTATGTGGCCCCTGAGTCTAGGGTGGTTGGTGCTGGAGAGTTAGTTGACCATCCTAAGAAAATAGCTCTTCACTATCTTCACACATATTTTCTTTTTGATTTGTTTGTTGTACTTCCACTTCCTCAGATAATGATATTGTTTGTCTTACCAAAACACTTGGGAACATCAGGAGCAAATTATGCAAAGAATCTTTTGCGTGCGGTCATCCTTGCTCAGTATATTCCCAGATTGTGTAGGTTCCTCCCTATGCTAATTTCTCCAACCGGATTCATATTCGAGTCAGCATGGGCGAGTTTCTTCATAAATCTTTTTACCTTCATGCTATCTGGTCATGTTGTTGGGTCATGGTGGTACCTCTTCGGTTTGCAGAGGGTTAATCAATGTCTACGAAATGCCTGCAAGAATACATATTTTGATGCATGCTCAAAATTCATTGATTGTGGACATGGAAGCACTGAGGAACATCTGAATGAAACAAATTGGACTCAGTGGAAGAAAAATGATAATGCAAGTGCTTGTTTTACAGAAGATGGTTTTGAGTATGGAATCTATCTTAAAGCTGTCAACCTGACTACAAAACATAATGTGATCACAAGATATGTATATTCATCATTTTGGGGATTCCAACAAATTAGTACTCTAGCTGGAAATTTGACGCCAAGCTATTTTATTTGGGAAGTCCTTTTCACAATGGGAATCATTGGATTAGGACTCTTGCTCTTTGCTCTTCTCATTGGAAACATACAGAACTTTCTTCAGGAGCTTGGAAGAAGGAGGCTAGAAATGTCACTTAGACAACGTGATGTCGAACAATGGATGAGCCATAGGCGCTTAGGAGAAGATCTGAGAAGGAGAGTGCGACAAGCTGAACGTTATAATTGGGCTGCGACTAGAGGAGTGAATGAAGAAATACTCATGGAGAATTTGCCAGAAGATCTTCAGAGGGACATCAGACGCCACCTTTTTAAATTTGTTAAGAAAGTTCGAATTTTCTCCTTGATGGATGATCGTATCTTGGATGCCATTTGTGAGAGACTGAGACAAAAAATATATATCAAAGGAAGCAAAGTTTTGTACGATGGTGGCTTAGTAGAGAAGGTGGTTTTTATCGTGCGGGGAAAATTGGAGAGTATAGGCGAAGATGGAATTAGAGTTCCACTATCTGAAGGCAATGTTTGCGGTGAAGAACTTCTTACATGGTGTCTCGAGCATACTTCAGGAAACAAAGTTTATGGAACAACAAGAATTCCAAGACAAAGGTTGATTAGCAATAGGACAGTATTATGCCTAACAAATGTGGAAGCATTTTCCATTAGAGCAGCAGACCTTGAAGAAGTTACAAAACTTTTTGCAAGATTCTTGAGGAGTCCAGGTGTTCAAGGAGCTATAAGGTATGAATCGCCGTATTGGAGATGTCTTGCAGCAACACGAATCCAGGTTGCATGGAGATACAGAAAGAAACGTCTTTATCGTGCTGACACTTCACAATCAAAATGTTGA 2301 0.3885 MAEFGTDEVPMLSETNPKQSNEHDDFKFKTRVSRTRSVSISIPMVPIDSYETDTNLKRHTGPLRSKRKTQYNPMSGPLYVTDKSGNVFRQNMTVPMSNAVESKTEKFPLSGQNERDSQYHYANKNEHLVRSGQLGMCNDPYCTTCPAYFKATQPRDSKNSGLFNPKFQNVLYGDAKDWARRISNFLIPNVPRVMNPHNKLVQQWNKFFAICCLVAIYVDPLFFFLLYVNKVQKCIVINSTMTTVLVILRSTNDFIHFLNIILQFRLAYVAPESRVVGAGELVDHPKKIALHYLHTYFLFDLFVVLPLPQIMILFVLPKHLGTSGANYAKNLLRAVILAQYIPRLCRFLPMLISPTGFIFESAWASFFINLFTFMLSGHVVGSWWYLFGLQRVNQCLRNACKNTYFDACSKFIDCGHGSTEEHLNETNWTQWKKNDNASACFTEDGFEYGIYLKAVNLTTKHNVITRYVYSSFWGFQQISTLAGNLTPSYFIWEVLFTMGIIGLGLLLFALLIGNIQNFLQELGRRRLEMSLRQRDVEQWMSHRRLGEDLRRRVRQAERYNWAATRGVNEEILMENLPEDLQRDIRRHLFKFVKKVRIFSLMDDRILDAICERLRQKIYIKGSKVLYDGGLVEKVVFIVRGKLESIGEDGIRVPLSEGNVCGEELLTWCLEHTSGNKVYGTTRIPRQRLISNRTVLCLTNVEAFSIRAADLEEVTKLFARFLRSPGVQGAIRYESPYWRCLAATRIQVAWRYRKKRLYRADTSQSKC 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03552 766 Gene3D Helix hairpin bin 524 589 - -
Vifa1g03552 766 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 137 757 - -
Vifa1g03552 766 CDD CAP_ED 597 713 IPR000595 -
Vifa1g03552 766 Gene3D - 206 523 - -
Vifa1g03552 766 ProSiteProfiles cAMP/cGMP binding motif profile. 597 665 IPR000595 -
Vifa1g03552 766 MobiDBLite consensus disorder prediction 1 25 - -
Vifa1g03552 766 Gene3D Jelly Rolls 595 719 IPR014710 -
Vifa1g03552 766 MobiDBLite consensus disorder prediction 56 76 - -
Vifa1g03552 766 SUPERFAMILY Voltage-gated potassium channels 196 521 - -
Vifa1g03552 766 Pfam Ion transport protein 204 525 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vifa1g03552 766 SUPERFAMILY cAMP-binding domain-like 525 720 IPR018490 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03552 Vifa-Chr1 550573539 550577775 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03552 7 675 Ion Channels AT3G17700 61.743 0.0 805
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03552 K05391 - gmx:100795955 1168.3