Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03540 ATGAATGCTCCGATGAAGAAAAAGATCCAAAAGAAGTGCAAAATCCGAGGCTACAACATCAAACCTGAAGCCCTCGACGAGATCCTCTCCTTCGTCACTCGATTCGAACCCACCGAACAAGAAGAAGCCATCGATCTCGTCCTCGAGAACCTTGAACACGAATCTGTCAAATCTACAGTAATTGATGTGGAGCCAGTTCAACGAGTGTTGAACTTGCTATTGGAAGCCGACGCGGCGGAGGAAACTGTTGAAACCTTCGCTTCATCTTCTTCTGCTATTGCCGTCATTGATGTGTTTGATGTTCTTAGATATAAATATGACGCTATCAGAAGGAATTTCTACCTGTACCCAGGAAGCTCACCTCTTCACGGAGATGCAGCAGCCAAATCTGCATTGTACAGGGATAGGTTTATGTTGTTGTCCCAGAGGCTTTCTCGTCACCAAGATTTTACGAAACCTGCTTTTGAGTCTGAACTTTCCCAATTCAGGAGTCGTGAGATATCTCCTATTCAATCTCTAGTTGGGCAAAAAGGTAGACGATGGGTAATGGGAGTAATATCTCAGCTGGAGGATGGGCATTTTTACTTGGAAGACCTTACCGCTTCAGTTAAAATCAGTTTATCTGATGCTATATCCTTTTGTGCTTTGACAAATCCATACAAGATTACTACGGGATTCTTCTTAGAGAACACCATAGTTGTGGCTGAAGGCGAGATGGTATCTGCAGAGGGCATTTTTCAGATTTATTCATGTGGATTTCCTCCACCAGAGGATAGAGATAAATCACTTCAAGTGCTTGCAGGCCATAACTTTTTTGGTGGTTGCACTTTTACAAAAGAAGAAACGATCAGACAGGAAGAGATGGAGAAAAGAGCAGTCAATGACATGTTTGTCATACTATCTGATATTTTTGTAGACAAAGAAGAGGCTATGGGAAAGCTAGAGATTGTTCTAGATGGTTTTGAGAGTGAGGAAGTCGTTCCTTCCTTATTTGTTTTCATGGGAGACTTCTGTTCTGTGCCATATAGCCAAGCATCAGGCCCTTTCTCGATCCTGAGGTTGCAGTTTGGCAGGCTAGGGAAAATTATTGCAGCCCGTCCAAGATTAAAAGAGAACAGTCGATTTCTTTTTATTCCAGGTCCTGGTGATATAGGTCCTTCAACAGTTCTTCCTAGGTGTAGATTACCTAAATGTTTAACTGAGGAGTTCCAAAAGTATATTCCCGAAGCCATATTTTCAAGCAATCCATGCAGGGTAAAATTCTATACACAAGAAATTGTGTTTTTCCGCCAGGATCAGCTGTATAGCATGAGTCGTTCTTCTCTAGTGCCACCTTCTGTGACAGAAACTACTGATCCTTTTCAGCATTTTGTTGCCACAATAACCCACCAGAGTCATCTCTGCCCCCTACCTCTAACTAAACAGCCTATCATATGGAATTATGACCATGGCCTTGATTTATATCCAACTCCGCACACGATAGTCTTAGGAGAGAGAAGTCCACAGAAGGCTTTTAAATACACAGGAACCACTTGTTTTAATACTGGATCCTTCTCGATGGATAGCACATTTGTAGTGTACCGTCCTTGCTCTCAGGAAGTTGAATTGTCATCCTTGTGA 1620 0.4241 MNAPMKKKIQKKCKIRGYNIKPEALDEILSFVTRFEPTEQEEAIDLVLENLEHESVKSTVIDVEPVQRVLNLLLEADAAEETVETFASSSSAIAVIDVFDVLRYKYDAIRRNFYLYPGSSPLHGDAAAKSALYRDRFMLLSQRLSRHQDFTKPAFESELSQFRSREISPIQSLVGQKGRRWVMGVISQLEDGHFYLEDLTASVKISLSDAISFCALTNPYKITTGFFLENTIVVAEGEMVSAEGIFQIYSCGFPPPEDRDKSLQVLAGHNFFGGCTFTKEETIRQEEMEKRAVNDMFVILSDIFVDKEEAMGKLEIVLDGFESEEVVPSLFVFMGDFCSVPYSQASGPFSILRLQFGRLGKIIAARPRLKENSRFLFIPGPGDIGPSTVLPRCRLPKCLTEEFQKYIPEAIFSSNPCRVKFYTQEIVFFRQDQLYSMSRSSLVPPSVTETTDPFQHFVATITHQSHLCPLPLTKQPIIWNYDHGLDLYPTPHTIVLGERSPQKAFKYTGTTCFNTGSFSMDSTFVVYRPCSQEVELSSL 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03540 539 PIRSF DNA_pol_epsilon_2 1 539 IPR016266 GO:0003677|GO:0006261|GO:0008622
Vifa1g03540 539 Gene3D - 2 72 - -
Vifa1g03540 539 Pfam DNA polymerases epsilon N terminal 2 68 IPR024639 -
Vifa1g03540 539 PANTHER DNA POLYMERASE EPSILON SUBUNIT B 1 539 IPR016266 GO:0003677|GO:0006261|GO:0008622
Vifa1g03540 539 Pfam DNA polymerase alpha/epsilon subunit B 297 502 IPR007185 GO:0003677|GO:0006260
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03540 Vifa-Chr1 549253373 549258318 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03540 16 508 Core DNA Replication Machinery Family AT5G22110 61.663 0.0 614
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03540 K02325 - zju:107419650 728.783