Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03532 ATGTGTAGTAGAGGCCATTGGAGACCATCTGAGGATGATAAGCTTAAGGAGTTGGTGGAAAGCTATGGACCTCATAATTGGAACGCCATAGCTGAAAATCTCAAAGGAAGATCAGGTAAAAGTTGTAGGTTGAGATGGTTCAATCAATTGGACCCAAGGATAAACAGAAATCCTTTCACCGAGGAAGAAGAAGAGCGTCTGATAACTTCTCATCGGATTCATGGCAATCGATGGGCCGTAATTGCGAGACACTTCCCCGGCCGGACGGATAACGCTGTTAAGAATCATTGGCATGTGATGATGGCGAGGAGTCGTCGCGAAAGGTACAAGATCTATGCGAAAGGTCCTCTTGATCATCACATAATTTTCTCTCCAAATGATCATCAAACAAACTTAGAGGCAAGAAATCTTCATTCTTTTGTTGAGAACTATCATGAAAAGAATAATCACCAAAGTGTCTCATATAACCGTTTCCAATTTCCGATGTTTCGGTTTAAAGATCCAAGTTCTTGTTCCACAATGCATCAAGATAAAACACAATCAATTGAGTTCTATGATTTTCTTCAATTAGATTCCAATAAAAGTGAAGTTACTGATAATGCTAGAAGAGATGATGAGGAAGTGAATCAAAATGTTGTGGAGCTAAAGAACAAAGAAAAACATGTTCCATTCATTGATTTTTTGTCTACTTCAAGCTGCTAA 702 0.3889 MCSRGHWRPSEDDKLKELVESYGPHNWNAIAENLKGRSGKSCRLRWFNQLDPRINRNPFTEEEEERLITSHRIHGNRWAVIARHFPGRTDNAVKNHWHVMMARSRRERYKIYAKGPLDHHIIFSPNDHQTNLEARNLHSFVENYHEKNNHQSVSYNRFQFPMFRFKDPSSCSTMHQDKTQSIEFYDFLQLDSNKSEVTDNARRDDEEVNQNVVELKNKEKHVPFIDFLSTSSC 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03532 233 SUPERFAMILY Homeodomain-like 4 97 IPR009057 -
Vifa1g03532 233 Coils Coil 198 218 - -
Vifa1g03532 233 Pfam Myb-like DNA-binding domain 4 50 IPR001005 -
Vifa1g03532 233 Pfam Myb-like DNA-binding domain 56 99 IPR001005 -
Vifa1g03532 233 SMART sant 3 52 IPR001005 -
Vifa1g03532 233 SMART sant 55 103 IPR001005 -
Vifa1g03532 233 FunFam MYB transcription factor 4 55 - -
Vifa1g03532 233 ProSiteProfiles Myb-like domain profile. 1 50 IPR001005 -
Vifa1g03532 233 PANTHER MYB PROTEIN-RELATED 4 171 - -
Vifa1g03532 233 ProSiteProfiles Myb-like domain profile. 51 101 IPR001005 -
Vifa1g03532 233 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 50 IPR017930 -
Vifa1g03532 233 Gene3D - 57 121 - -
Vifa1g03532 233 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 51 105 IPR017930 -
Vifa1g03532 233 Gene3D - 4 55 - -
Vifa1g03532 233 CDD SANT 7 48 IPR001005 -
Vifa1g03532 233 CDD SANT 58 101 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03532 Vifa-Chr1 548027409 548028730 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03532 1 231 MYB Transcription Factor Family AT1G17950 54.472 2.22e-79 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vifa1g03532 Myb_DNA-binding 1.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03532 K09422 - gmx:100811746 332.798