Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03531 ATGCACCCTCTCAAACCAACCCTCTTTACTCTCTTCTCCACTTTCATCCTCGCCGCCGCCGGCAACATCCAACTAGACTTCCCTTATTTCACCACCACAAACATCACCTTCACCGGCGATTCCTCTCTCACGAACCGCGTCATTTCACTAACAAAACCAACCTCACTCAGCACCGGTTCCATCCTTTACAACAACCCAATCCCTCTCTTTGACAAACAAACAAACACCACGTCTTCATTCTCAACAACCTTCTCTTTCTCCATCACTAACCCCAATAATCCCACTTCCTTCGGTGATGGCATCTGTTTCTTCCTCTCTCCCAACAATCTCTCCTCCTCCTCCTCCTCCTCTTTCTCTCCCTTTGGCCTTCCTATGAATTTCGTGGCAGTTGAATTCGATACTCGATTCAATCCTCGATTCAACGACCCGAACGAAAATCATATCGGTTTCAACATTGATACATTGAACTCTCTTCGTACTGTTGACCCTATTTTCAATGGAATTGATCTCAAGAGTGGCAACACTATCACTTCTTGGATTGATTACAAGACTGATCAAAACTCTCTTTCTGTGTTCTTGAGCTATTCTGGTATTAAGCCTCTTGAACCTATTCTCTTTGTAAATGTTGATCTTTCAGAGTATTTTCGAGATAACAAAGATGTTTACGTTGGTTTTTCGGCTTCTGCTGAAAAAAGTACTGAACTTCATCAAATTGAAAGATGGAGTTTTTACACTATTGGGTTTGAACCTGCCAGACCCCGGTTGCATAGTCACAATGTTTCGGATAATTCTGTTATCGGGAATGAGATGAACGGTAAAGGTCACAGATCGCGTTCCTCTAATTCCAAGAAGAGATTTGGTTTTGGTTTTGCTGTTGCAGGTCCTGTTTTTTTCTGTGCTGTTTTTTCTTTGTTGGGGTATTATTCTTTTTTGAAATGGAAGGAGGTGAAAAAAGATTCGTCAAAGGATTTTGATCCCGGGTTTGTTGCTTGTCCTAGAGAGTTTGATTACAAAGAATTGAAATCTGCTACAAGAGAGTTTCATCCTAGTAGAATCGTTGGCCACGGTTCGTTTGGTACTGTGTATAAAGCGTTCTTCATATCTTCAGGAACCATTGCTGCAGTGAAAAGATCGAGGCATTCTCACGAAGGGAAGACCGAGTTTTTGTCTGAATTGTCCATCATTGCTGGCTTAAGGCACAAGAATTTGGTTCAGTTGTTGGGTTGGTGCGTTGAGAAAGGTGAGCTGCTGCTTGTTTATGATTTCATGCCTAATGGAAGCTTAGACAAGATGCTTTACAAAGAACCTGAAAGGGGGAAGCTGTTGAATTGGTCTAATAGGTTTAACATTGTTGTTGGTTTAGCTTCTGTTTTGGTTTATCTTCATCAAGAATGTGAGCAAAGAGTGATTCATAGAGACATCAAAACCGGGAATGTTTTGCTCGACGGGAATTTCAATGCTAGGTTGGGTGATTTCGGATTAGCTAAACTCATGGATCATGATAAGAGTCCTGTTTCAACTTTAACTGCTGGAACAATGGGATACCTTGCACCTGAATATCTTCAATACGGTAAAGCTACTGATAAAACCGACGTTTTCAGCTACGGCGTTGTTGTGCTTGAAGTTGCTTGTGGGAAAAGGCCTATCGAAAAAGAGGGTCAAAAGATGGTTAACTTGGTGGATTGGGTTTGGGGATTGTATTCCGAAGGGAAGATAATCGAGGCCGTTGATAAGAGGTTGAACGGTGAGTTTGAAGTAGAGGAAATGAAGAAGCTTTTGATGTTGGGGTTGAGTTGTGCTAATCCTGATAGTGCTGAGAGACCTACTATGAGAAGAGTATTGCAGATTCTTAACAATGAATCTGTGCCATTTGCTTTGCCAAAAGTGAAACCAACCTTAACTTTCTCATCTGATTTGCCATTGACTATTGATGAGATTGTTTCTGGTGAGGATGGTGATGATTATCAAGAGTTCAATACTAGTCAATCTATGTGTGAGATTAAAATTGACTGA 2013 0.4128 MHPLKPTLFTLFSTFILAAAGNIQLDFPYFTTTNITFTGDSSLTNRVISLTKPTSLSTGSILYNNPIPLFDKQTNTTSSFSTTFSFSITNPNNPTSFGDGICFFLSPNNLSSSSSSSFSPFGLPMNFVAVEFDTRFNPRFNDPNENHIGFNIDTLNSLRTVDPIFNGIDLKSGNTITSWIDYKTDQNSLSVFLSYSGIKPLEPILFVNVDLSEYFRDNKDVYVGFSASAEKSTELHQIERWSFYTIGFEPARPRLHSHNVSDNSVIGNEMNGKGHRSRSSNSKKRFGFGFAVAGPVFFCAVFSLLGYYSFLKWKEVKKDSSKDFDPGFVACPREFDYKELKSATREFHPSRIVGHGSFGTVYKAFFISSGTIAAVKRSRHSHEGKTEFLSELSIIAGLRHKNLVQLLGWCVEKGELLLVYDFMPNGSLDKMLYKEPERGKLLNWSNRFNIVVGLASVLVYLHQECEQRVIHRDIKTGNVLLDGNFNARLGDFGLAKLMDHDKSPVSTLTAGTMGYLAPEYLQYGKATDKTDVFSYGVVVLEVACGKRPIEKEGQKMVNLVDWVWGLYSEGKIIEAVDKRLNGEFEVEEMKKLLMLGLSCANPDSAERPTMRRVLQILNNESVPFALPKVKPTLTFSSDLPLTIDEIVSGEDGDDYQEFNTSQSMCEIKID 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03531 670 PANTHER - 36 621 - -
Vifa1g03531 670 ProSitePatterns Legume lectins beta-chain signature. 128 134 IPR019825 -
Vifa1g03531 670 Gene3D Transferase(Phosphotransferase) domain 1 423 625 - -
Vifa1g03531 670 Pfam Protein kinase domain 348 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g03531 670 Gene3D - 21 256 - -
Vifa1g03531 670 SUPERFAMILY Protein kinase-like (PK-like) 330 638 IPR011009 -
Vifa1g03531 670 SUPERFAMILY Concanavalin A-like lectins/glucanases 23 245 IPR013320 -
Vifa1g03531 670 CDD STKc_IRAK 353 619 - -
Vifa1g03531 670 CDD lectin_legume_LecRK_Arcelin_ConA 23 247 IPR001220 GO:0030246
Vifa1g03531 670 FunFam L-type lectin-domain containing receptor kinase VIII.1 423 635 - -
Vifa1g03531 670 Pfam Legume lectin domain 24 247 IPR001220 GO:0030246
Vifa1g03531 670 SMART serkin_6 347 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g03531 670 FunFam L-type lectin-domain containing receptor kinase VIII.1 310 422 - -
Vifa1g03531 670 Gene3D Phosphorylase Kinase; domain 1 312 422 - -
Vifa1g03531 670 ProSitePatterns Serine/Threonine protein kinases active-site signature. 469 481 IPR008271 GO:0004672|GO:0006468
Vifa1g03531 670 ProSiteProfiles Protein kinase domain profile. 347 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g03531 670 ProSitePatterns Protein kinases ATP-binding region signature. 353 376 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03531 Vifa-Chr1 547847667 547849679 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03531 16 653 Receptor kinase-like Gene Family AT5G55830 58.434 0.0 742
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vifa1g03531 Pkinase 8.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03531 - - adu:107496163 879.011