Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03510 ATGACGTTTATGAATAACATTAGAAGCGCTACGAAAGAAGCGTTGGATCGCACAGCGATAATCGCAAAGTTCTTATGTTGCCTTCACTTCACCGCCAACTACCTCTGTTCCCCAACTCACGCGTACGGACCTAGCATGCTCCCTACCCTAAACATCGCCGGCGATGTTCTTCTCGTCGAACACCTATCTCCGCGGATCGGGAAAGTTGGTCATGGTGACTTGGTTCTTGTTCGCTCGCCTTTGAACCCTAATCGGAACTTGACAAAACGTGTTGTTGCTATGGAAGGGGATACTGTTACTTTCTTTGATGCTTCGGGTTCCGATTCCTCCAGAACTGCTGTGGTGCCAAAGGGGCATGAAAAGTGTTTTTGCGGGTTTGGCCACCCAGTAGCTTTGGACTGCTTGATAATTGAAGATATTTTAATGAAGTGCTCCTTTAACTGCATCTAA 450 0.4711 MTFMNNIRSATKEALDRTAIIAKFLCCLHFTANYLCSPTHAYGPSMLPTLNIAGDVLLVEHLSPRIGKVGHGDLVLVRSPLNPNRNLTKRVVAMEGDTVTFFDASGSDSSRTAVVPKGHEKCFCGFGHPVALDCLIIEDILMKCSFNCI 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03510 149 CDD S26_SPase_I 43 97 IPR019533 GO:0004252|GO:0006465
Vifa1g03510 149 Gene3D Umud Fragment, subunit A 32 124 - -
Vifa1g03510 149 PANTHER PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED 4 119 - -
Vifa1g03510 149 SUPERFAMILY LexA/Signal peptidase 34 102 IPR036286 -
Vifa1g03510 149 Pfam Signal peptidase, peptidase S26 21 102 IPR019533 GO:0004252|GO:0006465
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03510 Vifa-Chr1 545257737 545265361 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03510 46 119 MADS-box Gene Family AT1G29960 52.000 9.38e-21 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03510 K09647 - cave:132173278 170.629