Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03508 ATGGGATCCACAACTTGCACTGGATCAGAACCTTTCCCAGTACTCACCAACATAAATATTCATCTTCTCAGAATCACTTCAAAGGACACTGCACCTCAAAAGGGTAAAAGACGGCTAAGCCAAAGAAGGCTCCTCCGTTCTCGAAGTGCTCCTCACACAGATCATGCTCCTCTGGTGAGAAATGGCAACGAATCATCAAATCCTCTTTCTGAGTCTATGTTTGGGAATCTACATCCAAGCTTTAGAAAAGTTGCTATAATCCTTATCATCTATTTAGGCATAGGAACTTTAATCTTCTACCTTGTGAGAAACCAAATCAAGGGAATGAAAACAGATAAATTCCTTGATGCCCTATACTTTACAATTGTGACAATGACCACCGTTGGATATGGAGACCTTGTGCCTAATAGCGACCTTACAAAACTACTCGCGTGCGCTTTTGTTTTCTCCGGAATGGCGTTGATGGGACTAATCCTAAGCAAAGCAGCAGATTACTTGGTTGAGAAACAAGAAGTTTTGTTAATTAAAGCCATTCACATGCACCAAAAAGTTGGTCCAAGTGAAATTTTAAAGGAACTTGAGACCAATAAAACTAGATATAAATTTATTCTGGTCCTTTTCGTTCTTTTGATTCTCGTTATTGCGGGGACAATCTTCTTAGTCGCTGTCGAAAAATTGGATGTTATTGATGCATTGTACTGTGTTTGTTCAACAATTACGACGCTTGGTTATGGCGATAAAAGTTTCTCTACCCAAGCTGGAAGAATATTTGCGGTGTTTTGGATATTAACCGGTACTATTTGTGTAGCTCAGTTTTTCCTCTACATGGCGGAACTGAACACTGAAAGCAGACAAAAGGCACTTGTCAATTGGGTTCTTACCAGGAAAATGACTAATCACGATTTGGAAGCTGCCGATCTTGATGAGGATGGCACTGTTGGGGCTGCTGAATTTGTCATTTATAAGTTGAAAGAGATGGGGAAGATTAGTCAAGAAGATATAACACTTGTGATGAAGGAGTTTGAAGAGCTTGACATTGATCAGTCTGGTACACTGTCTGTTTCTGATATAACACTTGCTCAACCATCTTAG 1092 0.3993 MGSTTCTGSEPFPVLTNINIHLLRITSKDTAPQKGKRRLSQRRLLRSRSAPHTDHAPLVRNGNESSNPLSESMFGNLHPSFRKVAIILIIYLGIGTLIFYLVRNQIKGMKTDKFLDALYFTIVTMTTVGYGDLVPNSDLTKLLACAFVFSGMALMGLILSKAADYLVEKQEVLLIKAIHMHQKVGPSEILKELETNKTRYKFILVLFVLLILVIAGTIFLVAVEKLDVIDALYCVCSTITTLGYGDKSFSTQAGRIFAVFWILTGTICVAQFFLYMAELNTESRQKALVNWVLTRKMTNHDLEAADLDEDGTVGAAEFVIYKLKEMGKISQEDITLVMKEFEELDIDQSGTLSVSDITLAQPS 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03508 363 SUPERFAMILY Voltage-gated potassium channels 194 300 - -
Vifa1g03508 363 SUPERFAMILY EF-hand 265 358 IPR011992 -
Vifa1g03508 363 PRINTS Two pore domain K+ channel signature 311 320 IPR003280 GO:0005267|GO:0016020|GO:0071805
Vifa1g03508 363 PRINTS Two pore domain K+ channel signature 237 265 IPR003280 GO:0005267|GO:0016020|GO:0071805
Vifa1g03508 363 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 84 335 IPR003280 GO:0005267|GO:0016020|GO:0071805
Vifa1g03508 363 Pfam Ion channel 86 167 IPR013099 -
Vifa1g03508 363 Pfam Ion channel 208 279 IPR013099 -
Vifa1g03508 363 Gene3D - 78 172 - -
Vifa1g03508 363 FunFam Calcium-activated outward-rectifying potassium channel 1 78 173 - -
Vifa1g03508 363 ProSitePatterns EF-hand calcium-binding domain. 306 318 IPR018247 -
Vifa1g03508 363 ProSitePatterns EF-hand calcium-binding domain. 345 357 IPR018247 -
Vifa1g03508 363 SUPERFAMILY Voltage-gated potassium channels 80 180 - -
Vifa1g03508 363 MobiDBLite consensus disorder prediction 30 67 - -
Vifa1g03508 363 Gene3D - 183 289 - -
Vifa1g03508 363 FunFam Two-pore potassium channel 1 182 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03508 Vifa-Chr1 544937169 544939409 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03508 67 361 Ion Channels AT5G55630 68.136 5.62e-151 428
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03508 K05389 - gmx:100800137 489.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g03508 1 544937169 544939409 Vifa1g03508 1 544937169 544939409 ECH