Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03501 ATGAGGAAATCTTTGGTTATAGCCTTTTTCGTAACCATATGCTTCATTGCTTTTGTCATATCCAAGATTGTTATCTCAATCCTCCTCTATAAAAGATGGAAAAGGAAACATGTCATTTATGAAGGCTATACAGGAGGTAAGATGGTGATATTTAGGTCTTCAATTCTTAAATCTTTAACAACTGAGATGGTGTTAAAGAAGACACAGAAACTGAACAACAAGGACATTATTGGTTCTGGTGGTTATGGTGTAGTTTACGAACTAAAACTGAACGATTCTGCGGCCTTTGCTGTGAAAAGAATGAACCGCGGAACTGCAGAGAGAGATAAAGGTTTTGAAAGAGAGTTACAAGCAATGGCAGACATAAAACACCGCAATGTTGTGACTCTTCATGGATATTATACTGCGCCACATTACAATCTTCTCATATATGAGTTAATGCCTAATGGAAGTTTGGATTCCTTTTTGCATGGGAGATCGGCGAACAAGAAGGTTTTGGATTGGAAAACAAGACACGGAATAGCTTTAGGTGCAGCTAGAGGAATATCATATCTTCACCATGATTGTATCCCTCACATTATCCACAGAGATATCAAGTCAAGTAATATATTGCTGGATCAAAATATGGAAGCTCGAGTTTCGGATTTCGGGTTAGCCACGCTAATGGAACCAAACAAAACTCATGTTTCAACAATTGTTGCTGGAACTTTCGGATACTTGGCTCCAGAATATTTTGATACAGGAAGAGCAACAGTCAAAGGGGATGTTTACAGTTTCGGAGTTGTGTTGTTGGAGCTTTTAACCGGAAAGAAACCTAGTGATGAAGCATTTATGGAAGAGGGAACAAAACTCGTGACATGGGTGAAAGCTGTTGTTCAAGAGAAGAAAGAGGAATTAGTTCTTGATAGTAGCTTAGGTTCATGTTGTCCAATGCATGAGGTCAACAAGGTGTTCAACATTGCAATGATGTGTCTTGAACCAGATCCTCTGGACAGGCCAACTATGGCTGAAATCGTCAACTTGCTCGAGAAAACCGAAACAGGTTCCTGA 1050 0.3943 MRKSLVIAFFVTICFIAFVISKIVISILLYKRWKRKHVIYEGYTGGKMVIFRSSILKSLTTEMVLKKTQKLNNKDIIGSGGYGVVYELKLNDSAAFAVKRMNRGTAERDKGFERELQAMADIKHRNVVTLHGYYTAPHYNLLIYELMPNGSLDSFLHGRSANKKVLDWKTRHGIALGAARGISYLHHDCIPHIIHRDIKSSNILLDQNMEARVSDFGLATLMEPNKTHVSTIVAGTFGYLAPEYFDTGRATVKGDVYSFGVVLLELLTGKKPSDEAFMEEGTKLVTWVKAVVQEKKEELVLDSSLGSCCPMHEVNKVFNIAMMCLEPDPLDRPTMAEIVNLLEKTETGS 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03501 349 ProSitePatterns Protein kinases ATP-binding region signature. 77 99 IPR017441 GO:0005524
Vifa1g03501 349 ProSitePatterns Serine/Threonine protein kinases active-site signature. 193 205 IPR008271 GO:0004672|GO:0006468
Vifa1g03501 349 SUPERFAMILY Protein kinase-like (PK-like) 51 343 IPR011009 -
Vifa1g03501 349 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 8 346 - -
Vifa1g03501 349 FunFam Receptor-like serine/threonine-protein kinase 42 146 - -
Vifa1g03501 349 Gene3D Phosphorylase Kinase; domain 1 47 146 - -
Vifa1g03501 349 Gene3D Transferase(Phosphotransferase) domain 1 147 348 - -
Vifa1g03501 349 ProSiteProfiles Protein kinase domain profile. 71 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g03501 349 Pfam Protein kinase domain 73 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g03501 349 SMART serkin_6 71 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g03501 349 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 147 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03501 Vifa-Chr1 544457735 544459277 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03501 3 343 Receptor kinase-like Gene Family AT2G35620 44.767 1.04e-97 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIa Vifa1g03501 Pkinase 1.6e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03501 - - ahf:112703495 588.956