Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03497 ATGATGTTGTTGTTCATGGGTTTGTGTTCTAGAGCTGTTGTGTTTTTGTTTGGTTTGGTTTTTGTTATGTTGATTGTTGAGGTGGATTTAGCAGATTGTGGTGGGGATGTTAGGAATTATATTAGTTGGGAAGATTTGATGGTTGATGAACAAAGATTGGTTTTGAAGAAGAACAATATATATAATCATAATGAGTTTAGAGTTATTGTTGTTGATCAGAATGGAAATGGACATTCGAAAACTGTTCAAGGTGCAGTTGATTTGGTTCCTGATTGGAACAAACATAGAGTCAAAATCTACATTTTTCCAGGAATTTACAGAGAAAGAGTGTTTGTACCGATTACGAAGCCTTATGTATCGTTTATTGGTAGAAGAAATCTAACTGCAGGTCCTGTAATTACTTGGAACAGCAAATCATCAGATAGAGGCCCAAATGGTCAGACATTGGGAACCTACGGTTCAGCAACTGTCGCGATTGAGTCAGATTTTTTCTGTGCAACTGGAGTTACTTTTGAGAACACAGTGGTTGCATCGGCAGGTGGAAAAGGAATGCAAGCAGTGGCGCTGAGAGTAGACAGTGATAAAGCAATGTTCTATAGAGTTAAGATTAGAGGAACACAAGACACTCTCTTGGATAACACAGGAACTCACTATTTCTACCGGTGTCTCATCGAAGGAAAAGTTGATTTCATCTTTGGCAGTGCAAAATCACTCTACAAGAAGTGTAGGCTTCAATCGATAGCTGAGAACTATGGAGCAATTGCAGCACATCATAGGGATTCACCTTTTAAAGATACAGGATTTTCTTTTGTAGGATGCAGTATTAGAGGAACAGGAAGTGTGTACCTTGGAAGAGCTTGGGCGGATTACTCGAGAGTAATTTACTCGAACTGTCGTATGGATGATATTATTATTCCAGAAGGCTGGTCAGAATGGGATCATCCCGAAAGAGAAAAGACTGCTGTGTTTGGTGAATATATGTGCTATGGAAAAGGAGCAGACAGAAAACAAAGGGTGCCTTGGTCAAAATCATTAAGCTATGAAGAAGCGAAGCCTTTTTTGGACATTAACTTCATAAATGGAAATCAATGGCTTAGACTGTAG 1104 0.3895 MMLLFMGLCSRAVVFLFGLVFVMLIVEVDLADCGGDVRNYISWEDLMVDEQRLVLKKNNIYNHNEFRVIVVDQNGNGHSKTVQGAVDLVPDWNKHRVKIYIFPGIYRERVFVPITKPYVSFIGRRNLTAGPVITWNSKSSDRGPNGQTLGTYGSATVAIESDFFCATGVTFENTVVASAGGKGMQAVALRVDSDKAMFYRVKIRGTQDTLLDNTGTHYFYRCLIEGKVDFIFGSAKSLYKKCRLQSIAENYGAIAAHHRDSPFKDTGFSFVGCSIRGTGSVYLGRAWADYSRVIYSNCRMDDIIIPEGWSEWDHPEREKTAVFGEYMCYGKGADRKQRVPWSKSLSYEEAKPFLDINFINGNQWLRL 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03497 367 Pfam Pectinesterase 69 362 IPR000070 GO:0030599|GO:0042545
Vifa1g03497 367 SUPERFAMILY Pectin lyase-like 68 365 IPR011050 -
Vifa1g03497 367 FunFam Pectinesterase 64 367 - -
Vifa1g03497 367 Gene3D - 67 367 IPR012334 -
Vifa1g03497 367 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 57 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03497 Vifa-Chr1 543934582 543936447 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03497 36 319 Carbohydrate Esterase AT5G55590 58.863 1.49e-128 370
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03497 K01051 - gmx:100804220 546.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g03497 1 543934582 543936447 Vifa1g03497 1 543934582 543936447 ECH