Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03483 ATGGAAGAAGACCCAGATTCACGAAAGCAAGCTAGGCTTGCCATTTTGGAGCTAGCGAACATGATAAGCGTCCCTATGTCCTTAAACGCCGTCGTACGTCTCAACGTTGCCGATGCAGTCTGGGAAGGTGGTTCCAACGCGCCTCTCACTGCCGCTCAGATCCTCGCGCGTGTAATTCCAACCGGTGGCGGCGACGCCGAGAATCTCCAGCGCGTGCTACGCATGCTCGCGAGTTACGGCGTGTTTGAGGAGCATGTCGGTGGCGGTGAAAGGAAGTACTCGCTAACTGATGTGGGGAAAACTCTTGTCACCGATGAACAGGGTTTATCTTATGGCTCTTACGTGCTCCAACACCACCAGGATGCCTTGATGAGAGCATGGCCATTGGTACATGAAGCAATTGTGGACCCATCAAAGGAGCCATTTGAGAGGGCTAATGGGGAAGGAGCATATGATTATTACCTAAAGAAACCAGAGATGAATGAGTTAATGTTGAAGGCTATGTCAGGGGTATCAGTGCCTTTCATGAAGGCTCTTTTAGGGAGTTACAATGGGTTTCAAAATGCGGAGAAGCTGGTTGATGTTGGTGGCAGTGGTGGTGATTGTCTCCGAATGATCATGCAGAAATATCCCAATATTAAAGAAGGGTTGAACTTTGATCTTCCAGAAGTTGTGGCCAAAGCACCACAAATTCGAGGTGTAACTCATGTGGGTGGTGACATGTTCAAGTACATTCCTCAAGCAGATGCTATCTTCATGAAGTGGGTGCTAACAACATGGACAGACGAAGAGGTCAAACACATAATGTCAAACTGTTACAAGGCACTCCCAGCAGGAGGAAAACTAATAGCTTGTGAGCCTGTGTTGCCGGAGGATTCGGATGATAGCCACAGGACAAGGGCATTGCTTGAGGGTGACATTTTTGTGATGACGATTTACAGAGCCAAAGGAAAGCATAGGACTGAAGAGCAGTTTAAGCAGCTTGCAGTTTCTGCAGGTTTCAATCTTTTCAAAGCCTTTCATGTAGATCATTTCTACGCTGTTCTTGAGTTTCAGAAATGA 1062 0.4746 MEEDPDSRKQARLAILELANMISVPMSLNAVVRLNVADAVWEGGSNAPLTAAQILARVIPTGGGDAENLQRVLRMLASYGVFEEHVGGGERKYSLTDVGKTLVTDEQGLSYGSYVLQHHQDALMRAWPLVHEAIVDPSKEPFERANGEGAYDYYLKKPEMNELMLKAMSGVSVPFMKALLGSYNGFQNAEKLVDVGGSGGDCLRMIMQKYPNIKEGLNFDLPEVVAKAPQIRGVTHVGGDMFKYIPQADAIFMKWVLTTWTDEEVKHIMSNCYKALPAGGKLIACEPVLPEDSDDSHRTRALLEGDIFVMTIYRAKGKHRTEEQFKQLAVSAGFNLFKAFHVDHFYAVLEFQK 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03483 353 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 109 351 IPR029063 -
Vifa1g03483 353 Pfam O-methyltransferase domain 131 335 IPR001077 GO:0008171
Vifa1g03483 353 Gene3D Vaccinia Virus protein VP39 107 353 IPR029063 -
Vifa1g03483 353 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 16 353 IPR016461 GO:0008168
Vifa1g03483 353 PIRSF O-mtase 1 353 IPR016461 GO:0008168
Vifa1g03483 353 Gene3D - 1 106 IPR036388 -
Vifa1g03483 353 SUPERFAMILY "Winged helix" DNA-binding domain 7 105 IPR036390 -
Vifa1g03483 353 PANTHER O-METHYLTRANSFERASE 18 340 IPR016461 GO:0008168
Vifa1g03483 353 FunFam Caffeic acid 3-O-methyltransferase 108 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03483 Vifa-Chr1 541972152 541974093 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03483 3 353 Monolignol Biosynthesis Gene Families AT3G53140 72.753 0.0 549
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03483 - - gmx:100784957 608.986